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ModelSEED
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ModelSEEDDatabase
This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
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Adding file for checking status of template reactions
#104
samseaver
closed
5 years ago
0
Updating update of obsolescence in reactions
#103
samseaver
closed
5 years ago
0
Building solr
#102
samseaver
closed
5 years ago
0
New script for adjusting water
#101
samseaver
closed
5 years ago
1
Updating code for building SOLR objects
#100
samseaver
closed
5 years ago
1
Stripping compartment information from names
#99
samseaver
closed
5 years ago
0
Fungal
#98
janakagithub
closed
6 years ago
0
Microbial subsystems
#97
samseaver
closed
6 years ago
1
Pathways not assigned to reactions in flat files
#96
lcottret
closed
5 years ago
1
New formula checking and reaction balancing
#95
samseaver
closed
6 years ago
0
empty reactions are printed but not errors
#94
JamesJeffryes
closed
6 years ago
0
Implemented removal of reagents of zero coefficient
#93
samseaver
closed
6 years ago
1
Updating out-of-date InChI structures
#92
samseaver
closed
6 years ago
0
Update Validate_Compounds_JSON.py
#91
JamesJeffryes
closed
6 years ago
0
Second attempt at cherry-picking commits for InChIkey structures
#90
samseaver
closed
6 years ago
0
Reverting incorrect obsolete flag
#89
samseaver
closed
6 years ago
2
Update of InChIKey and SMILE in compounds
#88
samseaver
closed
6 years ago
4
Empty reactions in templates
#87
samseaver
opened
6 years ago
0
Fix validation to be consistent with is obsolete being int and switch…
#86
JamesJeffryes
closed
6 years ago
0
widespread update on correctly building transport equations
#85
samseaver
closed
6 years ago
1
checking duplicates in Travis
#84
samseaver
opened
6 years ago
3
Updating name and enzyme class aliases
#83
samseaver
closed
6 years ago
0
Adding structures
#82
samseaver
closed
6 years ago
4
Are (S)-3-Hydroxyisobutyrate / (S)-3-Hydroxyisobutyric acid really what they are supposed to be?
#81
smoretti
opened
6 years ago
0
Merging reactions
#80
samseaver
closed
6 years ago
1
Merging fructose
#79
samseaver
closed
6 years ago
1
Updated Aliases BiGG database
#78
Fxe
closed
6 years ago
1
Adjusting protons
#77
samseaver
closed
6 years ago
0
Fixing small things to work with current scripts
#76
samseaver
closed
6 years ago
1
Json
#75
JamesJeffryes
closed
6 years ago
0
Adding first draft of python libraries for compounds and reactions
#74
samseaver
closed
6 years ago
2
Adjusting protons for 3 reactions
#73
samseaver
closed
6 years ago
2
Rebuilding reactions
#72
samseaver
closed
6 years ago
0
New set of default reaction statuses
#71
samseaver
closed
6 years ago
1
Adding biochemistry reformatted as JSONs
#70
samseaver
closed
6 years ago
1
Curate/fix template mappings
#69
samseaver
opened
6 years ago
0
Merging formulas to normalize them despite sources. Added Notes column
#68
samseaver
closed
6 years ago
14
Updating a notes column to store code from different processes
#67
samseaver
closed
6 years ago
5
renamed BiGG -> BiGG1, added BiGG2 as BiGG
#66
Fxe
closed
6 years ago
2
Potassium iodide formula
#65
asuccurro
closed
5 years ago
1
General SBML unit question about second multiplier
#64
smoretti
opened
6 years ago
1
Is "Biomass_biomass" compound similar to "Biomass" compound?
#63
smoretti
opened
6 years ago
1
Release
#62
JamesJeffryes
closed
6 years ago
0
fix a handful of reaction issues.
#61
JamesJeffryes
closed
6 years ago
0
reporting to both redis & keen
#60
JamesJeffryes
closed
6 years ago
0
fixing a number of metal ions with incorrect charges.
#59
JamesJeffryes
closed
6 years ago
0
Possible bug with reported deltaG using NADPH
#58
samseaver
opened
6 years ago
0
Curation of reversibility in database
#57
samseaver
opened
6 years ago
0
Templates
#56
JamesJeffryes
closed
6 years ago
8
Ensure that the flat structures are linked to chiral forms in aliases
#55
JamesJeffryes
opened
6 years ago
0
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