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ModelSEED
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ModelSEEDDatabase
This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
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Fixing error count tracking
#54
JamesJeffryes
closed
7 years ago
0
New update on list of InChI and SMILE structures
#53
samseaver
closed
6 years ago
1
Tests
#52
JamesJeffryes
closed
7 years ago
0
Fix to the reaction rxn31720
#51
janakagithub
closed
6 years ago
2
Malformed EC strings in JSON
#50
JamesJeffryes
closed
6 years ago
1
Merge all alias files
#49
JamesJeffryes
closed
7 years ago
1
Imbalanced reaction in templates
#48
JamesJeffryes
opened
7 years ago
0
Add ClassyFire compound classifications to biochemistry compounds
#47
JamesJeffryes
opened
7 years ago
0
Unicode strings in few compound and reaction names
#46
JamesJeffryes
closed
7 years ago
1
Wrong InChI for cpd00030
#45
JamesJeffryes
closed
7 years ago
2
Compound with weird charge
#44
JamesJeffryes
closed
5 years ago
2
Compound with unexpected characters in formula
#43
JamesJeffryes
closed
6 years ago
3
Some reactions don't have reactants and/or products
#42
JamesJeffryes
closed
5 years ago
3
Malformed InChI
#41
JamesJeffryes
closed
5 years ago
4
Untrimmed names/aliases and duplicated aliases
#40
JamesJeffryes
closed
7 years ago
0
Change compartment id in core template. Closes #31
#39
JamesJeffryes
closed
7 years ago
1
Remove duplicate reactions
#38
JamesJeffryes
closed
5 years ago
0
Remove duplicated compounds
#37
JamesJeffryes
closed
5 years ago
0
Update and automation of atom and compound validation
#36
JamesJeffryes
closed
7 years ago
0
Incorporate MetaNetX Biochemistry
#35
JamesJeffryes
opened
7 years ago
1
Fructanohydrolase reaction error
#34
gregmedlock
closed
7 years ago
4
Glutathione tautomerization
#33
JamesJeffryes
closed
5 years ago
9
Build_Model_Template.py failing for Mycobacteria
#32
tfarrah
opened
8 years ago
0
Templates/Core files have inconsistent compartment names
#31
tfarrah
closed
7 years ago
3
compartment indices don't match reaction DB
#30
gregmedlock
closed
5 years ago
2
Stable ObjectAPI codebase needed
#29
samseaver
closed
6 years ago
1
potential cpd issue
#28
nconrad
closed
8 years ago
4
URL for linking to ModelSEED compounds and reactions?
#27
djinnome
closed
7 years ago
8
Placeholder issue for reactions with charged protein reagents
#26
samseaver
opened
8 years ago
0
Integrating Pathway Data
#25
samseaver
opened
8 years ago
0
Core reactions/complexes integrated into genome scale model templates
#24
janakagithub
closed
8 years ago
0
odd reaction 1281967929
#23
nconrad
closed
7 years ago
5
Tweaks to template deployability
#22
ctseto
closed
8 years ago
6
Revised Reactions files
#21
ctseto
closed
8 years ago
0
Mycotemplate
#20
ctseto
closed
8 years ago
0
Mycobacterial templates
#19
ctseto
closed
8 years ago
0
Placeholder issue for decisions regarding use of reaction identifiers in ModelTemplate
#18
samseaver
closed
7 years ago
2
List of reaction issues
#17
ctseto
opened
8 years ago
0
What data should be included in a compartment-free Biochemistry object?
#16
mmundy42
closed
7 years ago
3
Plan for biochemistry database
#15
samseaver
closed
4 years ago
6
Load published models
#14
mmundy42
closed
7 years ago
2
Lots of reactions with status CPDFORMERROR
#13
mmundy42
closed
8 years ago
2
move database ids to separate fields
#12
nconrad
closed
7 years ago
2
PlaceHolder for discussing issues in building ModelTemplates
#11
samseaver
closed
7 years ago
4
How did status field get updated in reactions.master.tsv?
#10
mmundy42
closed
9 years ago
5
Place-marker for MetaCyc reaction RXN-1623 (rxn37218)
#9
samseaver
opened
9 years ago
3
Updating default values for charge
#8
samseaver
closed
9 years ago
0
possible compound name issue
#7
nconrad
closed
9 years ago
3
Compartment question
#6
nconrad
closed
8 years ago
4
inconsistent orders in equation/definition
#5
nconrad
closed
8 years ago
11
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