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This is more of a discussion/question than a proposal, because the right way forward isn't clear to me.
A week or two ago, AY.34 was designated in #217, proposed by @c19850727. It looks like this …
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By Hugo Gehant & Matthew Gustafson
Description
Sublineage of AY.43
Countries Circulating: Chile
We observed significant case increases in Chile for AY.43, and after further data analysis a s…
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New lineage proposal
by @CorneliusRoemer
Updated on 25th of September
Description
Sublineage of: #219, sister lineage of AY.33 (#215)
Earliest sequence: Week 26th of July (Denmark)
Countries …
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Hello!
I have tried to run the genemap example input command for the command line interface (--input-gene-map=genemap.gff) using the example genemap provided. However, I received the following err…
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### Description: Sub-lineage of AY
Countries circulating: mostly Turkey, Denmark, and Germany
First sequence: 2021-05-19 (according to outbreak.info)
Most recent sequence: 2021-08-16 (according to …
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Very cool project. I'm wondering whether you're planning to redo the analysis. Since last time, the number of sequences has almost doubled and there's a lot of new (labelled) diversity within Delta th…
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Proposal of a sublineage of Delta with:
Orf1ab: E1633D, N:G18V , S:V289I
18000 sequences mainly in USA
it reached 6% in Florida and it was circulating in the caribbean area
https://outbreak.info/…
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Joint work with :
Cornelius Romer (https://github.com/corneliusroemer)
Dror Bendet (https://github.com/DrorBendet/)
Description:
Sublineage of AY.4.2
Earliest sequences : 23.07.21
Most resent …
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**Proposed sublineage 1**
**Description**
**Sub-lineage of**: B.1.1.7 (414 sequences)
**Earliest sequence**: 2021/3/9 (the US-FL)
**Most recent sequence**: 2021/8/24 (the US-AK)
**Countries circu…
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Within the [task_taxonID.wdl](https://github.com/StaPH-B/public_health_viral_genomics/blob/main/tasks/task_taxonID.wdl) the task nextclade_one_sample is pulling `neherlab/nextclade:latest` which might…