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Hello, first of all I am very interested in your work. I try to run your code, when I run an epoch and save the model for validation, I get an error:
2022-08-01 23:10:31,978 - mmdet - INFO - Epoc…
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https://mp.weixin.qq.com/s/GwpjUZ6yTJkG6wIzW6w6fg
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Hi,
inferelator_prior.network_from_motifs uses transcript id from GTF file when writing gene x TF matrix. Is there an option to use gene name from GTF file instead?
Thank you,
Poorva
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非常高兴看到Julia 也有Hopfields Network! 恭喜恭喜！
我看到你是学计算生物学的不知是否对生物/基因逻辑电路（biological/ gene circuits) 感兴趣？
这个是[Uri Alon 的课程](https://www.weizmann.ac.il/mcb/UriAlon/courses/systems-biology-course-2018) 里面有系…
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**Edited to add proposed annotations for each lncRNA**
In progress - Hi
Figure 2 of PMID:31048766 describes 13 functions of lncRNAs. If the MFs for these RNAs are not available then other terms…
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https://mp.weixin.qq.com/s/FoEi0FiYOubUyVMZp-F0bw
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Hi,
I'm having trouble understanding how to write a script for the network_from_motifs subpackage. Can you please advise what the variable names should be or what the format of the input should be…
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Hi Jordan,
Another task for me is to detect actractors on a genome-scale network:
[processed_BottomStrain_GRNbased.txt](https://github.com/jcrozum/pystablemotifs/files/8284315/processed_BottomStra…
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Hello
I am getting an error when I tried the below command:
```
import pystablemotifs as sm
relative_path_to_model = "/scicore/home/cichon/thirun0000/attractors/attractors.txt"
primes = sm.…
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