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jcrozum
/
pystablemotifs
Python library for attractor identification and control in Boolean networks
MIT License
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Complex attractor not displayed correctly
#97
kyuhyongpark
opened
1 month ago
0
Broken dependency on Linux (pyboolnet)
#96
jcrozum
closed
3 months ago
1
Update reduction.py
#95
jcrozum
closed
8 months ago
0
bug: attractor not showing up properly
#94
kyuhyongpark
closed
8 months ago
1
using pystablemotifs in spyder via a conda enviroment
#93
Eugenio-Azpeitia
closed
9 months ago
2
Running time greatly depending on constant nodes
#92
kyuhyongpark
opened
1 year ago
3
Exclude target node in the interventions
#91
priyambial123
closed
9 months ago
3
Single driver fix
#90
jcrozum
closed
2 years ago
0
Attractors result is incomplete
#89
priyambial123
closed
2 years ago
1
Reducing network
#88
priyambial123
closed
2 years ago
1
gringo/clasp error when run-in Basic Usage Tutorial
#87
MarioGutierrezR
closed
2 years ago
4
Generate figures
#86
priyambial123
closed
2 years ago
5
Control targets
#85
priyambial123
closed
2 years ago
5
Update of node state in the network
#84
priyambial123
closed
2 years ago
4
DOI analysis
#83
priyambial123
closed
2 years ago
7
Initial state of nodes in a network
#82
priyambial123
closed
2 years ago
4
Motif reduction objects
#81
priyambial123
closed
2 years ago
3
Error to run boolean net to primes
#80
priyambial123
closed
2 years ago
9
Simulation cutoffs
#79
kyuhyongpark
closed
2 years ago
0
Integration in the CoLoMoDo Docker
#78
pauleve
closed
2 years ago
3
Making rule input more user-friendly
#77
kyuhyongpark
opened
2 years ago
3
Attractor control without pre-building succession diagram
#76
jcrozum
opened
2 years ago
1
MPBN
#75
yzongy
closed
2 years ago
5
error using AttractorRepertoire
#74
alekhyaa2
closed
2 years ago
5
Killed: 9
#73
yzongy
closed
2 years ago
4
Loading genome scale model
#72
yzongy
closed
2 years ago
7
Percolate refactor
#71
jcrozum
closed
2 years ago
0
Setting initial values
#70
alekhyaa2
closed
2 years ago
2
Update to Version 3: PEP-8 compliance
#69
jcrozum
closed
2 years ago
0
AttributeError: module 'numpy' has no attribute 'float64'
#68
alekhyaa2
closed
2 years ago
3
Conventions Update Needed: PyBoolNet 2 -> pyboolnet 3
#67
jcrozum
closed
2 years ago
1
Copied relevant changes from Implement_DOI. Rebuilt Manual.
#66
jcrozum
closed
3 years ago
2
Implement doi
#65
kyuhyongpark
closed
3 years ago
1
Mpbn support
#64
kyuhyongpark
closed
3 years ago
1
Rename library
#63
jcrozum
closed
3 years ago
0
Installation
#62
ArturoArciniega
closed
3 years ago
2
support CellCollective format
#61
kyuhyongpark
closed
3 years ago
0
Update documentation for Format.bnetDNF2list
#60
jcrozum
closed
3 years ago
3
Labeling conventions
#59
jcrozum
closed
3 years ago
0
Changed labeling scheme, updated tutorial, docs, and yED properties.
#58
jcrozum
closed
3 years ago
0
Control benchmarks
#57
jcrozum
closed
3 years ago
0
get_motifs vs get_motif_set
#56
jcrozum
closed
3 years ago
1
Implement DOI
#55
jcrozum
closed
3 years ago
1
Update yED properties mapper.
#54
jcrozum
closed
3 years ago
1
Succession simplification
#53
jcrozum
closed
3 years ago
0
Move get_motif_set out of Export.py
#52
jcrozum
closed
3 years ago
1
More graceful fallback when missing pydot/graphviz
#51
jcrozum
closed
3 years ago
1
MPBN Support
#50
jcrozum
closed
2 years ago
2
Documentation and cleanup
#49
jcrozum
closed
3 years ago
0
Import support for cell collective format
#48
jcrozum
closed
3 years ago
1
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