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jcrozum
/
pystablemotifs
Python library for attractor identification and control in Boolean networks
MIT License
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Multiple source nodes skipped in stable motif succession
#47
djwooten
closed
3 years ago
3
Error when setting include_attractors_in_diagram=True in Export.networkx_succession_diagram_motif_based()
#46
djwooten
closed
4 years ago
5
Remove old examples
#45
jcrozum
closed
3 years ago
1
Rbn testing
#44
jcrozum
closed
4 years ago
0
Attractor organization
#43
jcrozum
closed
4 years ago
0
Issue38
#42
jcrozum
closed
4 years ago
0
Issue38
#41
jcrozum
closed
4 years ago
0
Check new version of PyBoolNet
#40
jcrozum
closed
4 years ago
4
Avoid recalculating equivalent MotifReducitons
#39
jcrozum
closed
3 years ago
1
'UX' - working with succession diagrams
#38
deriteidavid
closed
3 years ago
15
Organizing attractors
#37
jcrozum
closed
3 years ago
8
Rspace representation tweaks
#36
jcrozum
closed
4 years ago
0
"Complex" attractor of size one in Phase-Switch Example
#35
jcrozum
closed
4 years ago
2
"UX" improvements to the code -- accessing and exporting the results
#34
deriteidavid
closed
3 years ago
15
import error in Linux (Ubuntu 18.04) - python 3.6.6
#33
deriteidavid
closed
4 years ago
5
PyBoolNet.PrimeImplicants._percolation
#32
jgtz
closed
4 years ago
7
Attractor counting and access
#31
jcrozum
closed
4 years ago
3
maxOutput in PyBoolNet and a potential associated error
#30
jgtz
closed
3 years ago
12
Rule of the form "() & (X)" during a reduction
#29
jgtz
closed
4 years ago
6
Simulation cutoffs
#28
jcrozum
closed
2 years ago
6
Dependencies
#27
jcrozum
closed
2 years ago
3
Pydot dependency
#26
jcrozum
closed
3 years ago
3
Scc and stg optimizations
#25
jcrozum
closed
4 years ago
0
Random boolean networks
#24
jcrozum
closed
4 years ago
0
Random Boolean network generator
#23
jgtz
closed
3 years ago
1
Succession diagram network export visualization
#22
jcrozum
closed
4 years ago
0
Grasp
#21
jcrozum
closed
4 years ago
0
GRASP
#20
jcrozum
closed
4 years ago
6
Testing benchmarking
#19
jcrozum
closed
4 years ago
0
Check that the minimal_history method removes redundant strategies properly.
#18
jcrozum
closed
4 years ago
4
Attractor reprogramming
#17
jcrozum
closed
4 years ago
0
Add explicit display option for motif history permutations
#16
jcrozum
closed
4 years ago
1
Succession diagram improvements
#15
jcrozum
closed
4 years ago
0
Include number of attractors for attractor_candidate_summary
#14
jgtz
closed
4 years ago
3
Source node improvements
#13
jcrozum
closed
4 years ago
0
Inherited networkx 2.4 incompatibility with PyBoolNet
#12
jcrozum
closed
4 years ago
3
Merge equivalent succession diagram nodes
#11
jcrozum
closed
4 years ago
8
Better handling of source nodes
#10
jcrozum
closed
4 years ago
3
Add option to hide update rules in summary of unreduced network.
#9
jcrozum
closed
4 years ago
2
added new test models
#8
rekaalbert
closed
4 years ago
0
added runner
#7
rekaalbert
closed
4 years ago
0
Inherited "bug" from windows PyBoolNet
#6
jcrozum
closed
4 years ago
2
Check that variable names and documentation are intuitive
#5
jcrozum
closed
3 years ago
5
Implement attractor reprogramming
#4
jcrozum
closed
4 years ago
3
Testing and benchmarking
#3
jcrozum
closed
3 years ago
3
Integrate partial STG building into attractor finder
#2
jcrozum
closed
4 years ago
4
Implement export to networkx option for SuccessionDiagram class (in Succession.py)
#1
jcrozum
closed
4 years ago
6
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