-
I'm analysing NGS data using the phyloseq package. I want to create a PCoA (Bray-curtis DM) plot using following code:
```ord_bc_pcoa
-
**Comments**
Just like `merge_mapping_files.py`.
-
Hi all,
I wish to compare my sequencing results of stool samples with the data available in the Human Microbiome Project. What I want to do is to calculate Unifrac distance between all the samples an…
-
Add speed comparisons between `TreeSE` and `phyloseq`.
This could go to the "Extras" chapter for the time being.
Always check that the output in the two is essentially the same, so that the com…
-
Requested in a working group that `nms_ord` support user changing point size / transparency (i.e., "alpha"). Seems like a good thing to also expand to `pcoa_ord` once I figure it out for `nms_ord`
-
From @ekunselman in #3254 :
> Would it be possible to add a parameter in Qiita pcoa_biplot that asks for the number of features (number of arrows) to display? This would also help clean up the bip…
-
Add the line `df = df.loc[:, (df != 0).any(axis=0)]` to the end of the Python section ofthe notebook. THis should improve performance
-
Add new examples using bluster to the clustering part. So far I've been thinking of adding most of the examples of the [bluster vignette](https://bioconductor.org/packages/release/bioc/vignettes/blust…
-
The shrimp microbiome is governed by Vibrionaceae, a family with important probiotic and disease-causing genera. After performing a comparison of the relative abundances of two conditions (healthy and…
-
Error executing Principal Coordinate Analysis Biplot [pcoa_biplot]: ['Traceback (most recent call last):\n', ' File "/home/qiita/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/qiita_client…