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When I run `nextflow run nf-core/chipseq -profile test,conda`, it stopped at
The **PhantomPeakQualTools** step can't be completed.
The log file is below
.nextflow.log
Mar-09 22:55:4…
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Running this tool without any parameters produces the following output:
```
Exception in thread "main" picocli.CommandLine$MissingParameterException: Missing required options [-openBisUrl=, -user=…
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For some reason logging in is part of QBiC Datadownloader -> this should probably be moved to another more general class to decouple the three modular classes: finder, downloader, inputstreamprovider.
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**Describe the bug**
The BWA indices are not found for `GRCh37` unfortunately.
**To Reproduce**
We used the `-profile cfc` switch on our infrastructure that should automatically set the `genome_…
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For every new component that is deployed in our maven repository, two requests will be sent. The main difference between these two requests is the `action` field found in the payload.
It first send…
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This is to avoid a "permission denied" error when downloading an artifact.
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Using the library and creating an `OpenBISClient` instance produces this exception, which does not occur in version `1.1.2`:
```java
Caught: java.lang.NoClassDefFoundError: ch/systemsx/cisd/common…
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This recursion fetches all datasets attached to descendant samples of the one searched for, but not of the sample itself:
https://github.com/qbicsoftware/postman-cli/blob/31a9ae5bc2287c7f690c955a6fb8…
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Steps to replicate:
1. Click on the _Offer manager_ tab.
2. Select the first project (could replicate with the first two project).
3. Click on the _Download offer_ button.
4. Following exception…
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## Version of Singularity:
2.4-dist
### Expected behavior
The name of a pulled image should match the one specified by the user
### Actual behavior
It add the `.simg` extension even if …