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Hi,
These two read count file are make when I run pipeline_rnaseqdiffexpression.py loadDESeq
I was wondering what is the different between two file. I know that it is the first that is considered in…
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Hi
pipeline_rnaseqtranscripts.py have some issue to find the file geneset_all.gtf.gz used by buildReferenceGeneSet.
when I configure the following parameters in pipeline.ini
like this (1)
directory…
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Hi, as mentioned in documentation, I tried to --sidecar option to create .txt file containing only OCR text since I'm interested only getting the OCR text and not PDF with OCR text.
However, when u…
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```
➜ lab git:(master) ✗ docker run --rm -v "$(pwd):/home/docker" ocrmypdf --output-type pdf --pdf-renderer tesseract --image-dpi 300 --force-ocr -l chi_sim+eng --sidecar output.txt c83d7218jw1e…
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If I run e.g.:
docker run -v /home/ryan:/home/docker jbarlow83/ocrmypdf-polyglot -l rus --force-ocr --sidecar=russian-ocr.txt russian.pdf russian-ocr.pdf
I get:
```
ERROR - Traceback (mo…
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[root@455691d6 OCRmyPDF]# pip3 install .
Processing /ssd/yc/OCRmyPDF
Collecting ruffus==2.6.3 (from ocrmypdf==5.2.post0+g3a7c341.d20170708)
Using cached ruffus-2.6.3.tar.gz
Complete output…
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Hi, basically I have created a script that launches Ocrmypdf.
```
$c = ('ocrmypdf -l lav --rotate-pages --pdf-renderer tesseract --output-type pdf --sidecar output.txt input.pdf output.pdf');');
…
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Here is the log.
> ks-MacBook-Pro:downloads k$ ocrmypdf input.pdf output.pdf
ERROR - Traceback (most recent call last):
File "/usr/local/Cellar/ocrmypdf/5.3.2/libexec/lib/python3.6/site-package…
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I see that the use of bx-python has been replaced with `quicksect` in `IndexedGenome`. However, this is causing gtf2table to raise a `quicksect.IntervalTree has no attribute before_interval` error. Th…
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I'm testing the peakcalling pipeline with the py3 environment, each pipeline seems to run individually now and I've pushed those changes, but I get the following error when it comes to the checksums -…