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I am noticing an issue when I run seqVCF2GDS(). If I run it in parallel I loose the trailing 7 SNPs in my data set. However when I run it serially all SNPs are accounted for.
```
> sessionInfo()…
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I am trying to set a filter and then to LD pruning (1KG dataset).
```R
f
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first, please tell me if it's the place to ask for question, or if there's a google group or if you prefer the Wiki section.
Question:
Is there a way to change/rename the sample.id in SeqArray ?
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Hi Thierry,
Thanks for all your work with radiator! I'm getting an error when trying to convert a VCF file (v4.2, biallelic, produced by FreeBayes) to genlight. This is the command used:
`genomi…
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Hi Xiuwen,
RStudio crashes while trying to import a very large VCF file (33GB) using this command (*sending the link to the file by email*):
```
vcf.connection
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Is there really a need for [`SeqArr`](https://github.com/louthy/language-ext/blob/master/LanguageExt.Core/DataTypes/Seq/SeqArr.cs)?
The thought I had is to implement all calls of the form
```
Seq…
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Is there a way to send the inner content of a token to a string without parsing it first and then running it back through a generator? Here is the scenario I am working on. Consider this JSON string:
…
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I've been getting errors trying to use genomic_converter() and write_colony().
I generated my original .vcf file in ipyrad, and then used PLINK to do some preliminary filtering (removing triallelic l…
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seqGDS2VCF(gds, "output.vcf.gz") generates a gzipped vcf but not bgzip-ed vcf. So tabix indexing fails.
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Bioconductor/DelayedDataFrame
Confirm the followi…