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Dear all,
Using the Enrich2 software package for the analysis of my pre-processed fastq files I run sometimes into an "IndexError: string index out of range".
```
2020-03-27 18:01:19,697 [enri…
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```
I had to do some index calculation and was catched by the folllowing:
The following source:
def cvt(str: String) -> uint16[] {
let size = str.size;
var utf = uint16[](size);
utf[size-1] = …
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```
I had to do some index calculation and was catched by the folllowing:
The following source:
def cvt(str: String) -> uint16[] {
let size = str.size;
var utf = uint16[](size);
utf[size-1] = …
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Normalization as done by `vg mod -n / -U` is known to be limited. When @jmonlong uses it on a graph created with several similar insertions at the same location, it makes some attempt to collapse mat…
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Hi
I have read your exhaustive introduction and paper and I think it can be useful for my purpose. My interest is to study Ecoli within-host diversity for each sample. Basically, each sample is a fas…
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Hi, I think ALDE should be very useful for the enzyme modification.
I have a question on prediction. After executed execute_production.py, I got some indices.pt files. How to map these files to a CS…
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Hi, Soren,
Thank you for developing the tool. It is easy to install and I can run your test dataset successfully.
However, when I run my own fastq file with the corresponding f/F/r/R sequences, I …
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Hi!
Can CHOP be used to do the actual read mapping, or does it just create a fasta file that I e.g will need to index with BWA and then map reads to? If so, I assume my final alignments will be rel…
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**1. What were you trying to do?**
I have created some graphs from either PGGB or a multi-sequence alignment from 10 salmonella sequences, with a large (~1Mbp) inversion in the middle. Then, I wanted…
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Dear Mr Hirotaka,
We read your paper on this protocol and I was wondering if you had a de-localised form of this repository that could be transferred and used on a different in-house system? We are i…