SorenKarst longread_umi issues

SorenKarst / longread_umi

GNU General Public License v3.0

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issues

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Does the pipeline work on the single tag UMI

#58 PavithraV0223 opened 9 months ago
0
UMInator: Nextflow pipeline inspired to longread_umi available

#57 MaestSi opened 9 months ago
0
R qc pipeline - file not found

#56 givdieri closed 1 year ago
0
Where is v0.4.2?

#55 sentausa opened 1 year ago
0
longread_umi pacbio_pipeline

#54 AMA-cs opened 1 year ago
0
Empty file umi12f.fa when when running usearch in longread_umi nanopore_pipeline

#53 mortenry opened 2 years ago
8
umi12 filtered during umi binning gawk command test_r941 data

#52 cstill3928 opened 2 years ago
0
Run nanopore pipeline without UMI binning

#51 thierryjanssens opened 2 years ago
0
centroids.fa

#50 thierryjanssens opened 2 years ago
2
how to run the pipeline with mulitiple primer pairs

#49 ShannonDaddy opened 2 years ago
0
longread_umi error when splitting fastq file into 10 tmp using GUN parallel, making subsequent analysis impossible

#48 lisiang opened 2 years ago
3
Nanopore pipeline fails when specifying medaka model r103_hac_g507

#47 thekatpod opened 2 years ago
5
Error from umi12.fa with test data R9.41

#46 mxttgen31 closed 2 years ago
0
Quick start examples exit with error (-U missing) and give different numbers

#45 scogi opened 3 years ago
5
How to calculate the relative abudanca of UMI amplicons?

#44 YulinzhangSia closed 2 years ago
1
Empty file umi12.fa with test data R9.41

#43 vincentmerckx opened 3 years ago
3
Cluster Ratio

#42 manterd closed 2 years ago
1
Test data error: medaka stitch step file missing

#41 rhinempi closed 3 years ago
4
'No such file or directory' & Guppy version

#40 LowYuKen closed 3 years ago
5
mkdir: cannot create directory path/to/dir: no such file or directory

#39 walexandertsu closed 2 years ago
3
Catch error in issue #35 where no reference UMIs are produced

#38 aaronsaunders opened 3 years ago
2
All pipelines hidden due to install directory name

#37 bmilash opened 3 years ago
2
Issues with install script

#36 walexandertsu opened 3 years ago
1
fatal error empty file ...

#35 cliu32 opened 4 years ago
8
Correct '-q' value for longread_umi nanopore_pipeline

#34 splaisan closed 4 years ago
2
lima demultiplexed

#33 tdfy opened 4 years ago
1
Update version

#32 SorenKarst closed 4 years ago
0
Fix PB racon polishing and update README and examples

#31 SorenKarst closed 4 years ago
0
Bug fix in variants

#30 SorenKarst closed 4 years ago
0
possible typo in install script

#29 splaisan closed 4 years ago
1
error with test command

#28 splaisan closed 4 years ago
4
Fix racon bug and integrate UMI filtering in pipeline

#27 SorenKarst closed 4 years ago
0
Racon bug, UMI bin filtering and minor updates

#26 SorenKarst closed 4 years ago
0
Move data overview

#25 SorenKarst closed 4 years ago
0
Add example rmd and fix duplicates in tools list

#24 SorenKarst closed 4 years ago
0
Link to html

#23 SorenKarst closed 4 years ago
0
Updated readme, function help and added example analysis

#22 SorenKarst closed 4 years ago
0
GNU parallel function export

#21 SorenKarst closed 4 years ago
0
Revamp readme

#20 SorenKarst closed 4 years ago
0
Recommend conda init and remove test instructions in conda init

#19 SorenKarst closed 4 years ago
0
Update repo name

#18 SorenKarst closed 4 years ago
0
Improved conda installation

#17 SorenKarst closed 4 years ago
0
Synchronize master and develop

#16 SorenKarst closed 4 years ago
0
Pipeline streamlining and improvements

#15 SorenKarst closed 4 years ago
0
Conda installation and remote server optimization

#14 SorenKarst closed 4 years ago
0
Taxonomic and AGP analyses

#13 wasade opened 4 years ago
0
Exchange usearch for vsearch

#12 SorenKarst opened 4 years ago
4
adapters.py import error

#11 splaisan closed 4 years ago
2
Empty umi_bin_map.txt file

#10 a-89 closed 4 years ago
8
Multiplexed reads structure

#9 MaestSi closed 4 years ago
6