-
Hi everybody, I have one question regarding the `Disclaimer` Section in the `pagedown::html_resume`:
* Is it possible to put the Disclaimer on the bottom of the last page?
I have two pages and I…
-
As a busy person, I want to drink coffee so that I wake up. And sometimes I want to link multiple Fastq files in an analysis directory to run BALSAMIC for generating a background data
# Problem:
…
-
Dear authors,
I saw at https://github.com/navinlabcode/copykat/blob/420a216eb149701ab96a2891ccefc170c434dbdd/R/copykat.R#L103-L104 you used the `dlm` package to smooth the expression value of one g…
-
[infercnv.pdf](https://github.com/broadinstitute/infercnv/files/5769841/infercnv.pdf)
`infercnv_obj = CreateInfercnvObject(
raw_counts_matrix=paste(here(name), "NI_3/ni3.1_CNV_data_out_all_cells…
-
Hi,
Thanks for your useful package!
How do we identify the real malignant cells? Can we calculate the CNV score for each cell from infercnv.observations.txt?
Thanks in advance and looking forward t…
-
https://mp.weixin.qq.com/s/ctNzKiZ4y23lkDphOu9HBw
ixxmu updated
2 years ago
-
Hi!
I'd like to use infercnv to distinguish between malignant and nonmalignant cells.Code I used in docker mirror are as follows :
```
options(error = function() traceback(2))
library("infercnv…
-
I created an infercnv object.
infercnv_obj = CreateInfercnvObject(raw_counts_matrix=counts_matrix,
annotations_file="/home/shaofeng/HM/CNV/tumor.sample.txt",
…
-
Hello,
I have been trying to get inferCNV to run on my downsampled Seurat object, but I have been running into the following error that I presented in the title of this issue post. I am running inf…
-
### Background
Balsamic version 8.2.1 is the latest release. Before deploying it to production, this newest release needs to be adequately tested with different analysis types for various [validati…