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for very large files (in my case I had a system with 26 000 W from which about 2600 I tried to change to WF) the script yields gro file unreadable by gromacs (editconf), vmd (strange atoms appear), or…
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Hello, can someone please review this list of MMD tools features and correct or fill in the blanks for me and also for other people:
MMD tools features:
Ability to pose or animate these morphs of an…
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> You can view the video [here](https://i.imgur.com/INSiZyJ.gifv), it explains it all.
> My `vmd` version : 1.33.1
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“To install LigninBuilder so that it is recognized every time VMD starts, the lappend auto_path line should be added to your .vmdrc file, ”
i‘m stuck on this step for weeks，can i get some tips.
sor…
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The play/pause UI for the media sometimes disappears. This usually happens when I have XRanimator tracking the media, then I click a pose to go back to webcam tracking. When I put in a new media, the …
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Some residues at the beginning and at the end of the chains are missing in the mesh.
If you compare a cartoon mesh from pymol/VMD/avogadro... and the mesh created by ribbon.go, you can see that som…
nezix updated
6 years ago
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Hey everyone,
This package looks awesome. However, running "conda install -c rbetz dabble" fails to install dabble, even in a newly created anaconda environment. Any suggestion on how to properly i…
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What is the distinction between the 'FEP' and 'BAR' estimation methods used in post-treatment alchemical analysis?
Why are there two different calculation method provided, and which one is more effec…
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When rendering condensed Fukui functions using VMD the labels of the condensed Fukui values are covered by the 3D objects. The labels appear to be fixed in a 2D plane perpendicular to the viewer point…
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vmd-python supports the parm7 format, but the file extension didn't match the type name, so I've added a line in `contact_utils.py` (https://github.com/akma327/MDContactNetworks/commit/640872646bf6614…