-
Hi Marco!
I'm trying to run a DuctApe analysis on an experiment with two different bacterial strain (and species). After adding the organisms, the genome annotation and the KAAS annotation, I run t…
-
Hello ppanggolin users,
I am trying to run a panrgp analysis on 40 bacterial genomes, however after the command :
ppanggolin panrgp --fasta fasta.input -o output_panrgp --cpu 12
everything…
-
Hello,
I am running BreSeq-0.37.1 and I get the error posted below for 5 samples. A sixth sample that used the same reference set and is an isolate from the same species was able to successfully fi…
-
==> Processed 62252/62292 sequences (100%) |██████████████▉| [569.91sequence/s, ETA 00:00]
[2022-11-30 15:09:…
-
Trying to do `redraw_maps.sh -p myproject -f svg` or `build_blast_atlas.sh -p myproject -m 48g` but i am getting the same following error :
```
org.xml.sax.SAXException: value for 'start' attribut…
-
**Description**
Hello @rpetit3 ,
We are currently using the `shigeifinder` wf in the bactopia tools, but it stucks for many hours. Please find the logs below.
> (base) gilmansiu3@gilmansiu3-Z49…
-
I have a set of 100 bacterial genomes. I annotated them with Prokka and performed pangenome analysis with Roary. Roary outputs the core gene alignment file which I then used to generate a phylogenetic…
-
**Submitting author:** @wrightaprilm (April Wright)
**Repository:** https://github.com/wrightaprilm/treesiftr
**Version:** v1.0.0
**Editor:** @juanklopper
**Reviewer:** @ethanwhite, @rachelss
**Archiv…
-
Hello
I am attempting to run breseq using a de novo aligned draft reference (.gff) and hitting an error at the sorting stage (output below). The reference is in ~200 contigs with some very small (1…
-
Would be useful to know memory requirements to pull an antismash docker image to a linux VM and run it. The dockerfile https://github.com/antismash/antismash/blob/master/Dockerfile and docker run http…