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Ecogenomics
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GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
https://ecogenomics.github.io/GTDBTk/
GNU General Public License v3.0
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FastTree returned a non-zero exit code
#604
esraagithub
opened
3 days ago
1
A failure of the classification of a reference genome
#603
biotengwk
opened
2 weeks ago
1
Difference between fastani_ani and closest_placement_ani
#602
saras224
opened
1 month ago
1
How to Interpret and Change IDs in Phylogenetic Trees Generated by GTDB-Tk?
#601
kuttibiotech2009
closed
1 month ago
0
GTDB-Tk 2.4.0: Prodigal returned a non-zero exit code
#600
Nura7177
closed
1 month ago
1
ANI values for the MAGs
#599
saras224
opened
1 month ago
2
GTDB-Tk/2.4.0 - Spirochaetota clustering far from other bacteria from the same phylum
#598
ValterAlmeida
opened
1 month ago
6
Using classify_wf with low completeness genomes
#597
lingrongjin
opened
1 month ago
1
Troubleshooting GTDB-Tk Database Installation and Environment Configuration
#596
soojunglee98
opened
2 months ago
3
Bacterial GTDB-Tk classification file does not exist error when using gtdb_to_ncbi_majority_vote.py
#595
schmittel
opened
3 months ago
1
Check install showing Hash Mismatch even though database MD5 checks
#594
ErikLHendrickson
closed
3 months ago
3
No sequence results for archaea in the align folder of classify_wf
#593
Liuhanlin22
closed
3 months ago
2
Error from skani
#592
jehaab
closed
4 months ago
2
Do I need a network to run classify_wf
#591
zhaoxuetong
closed
4 months ago
1
Is the lasted GTDB database version220 missing files?
#590
changhaozhou
closed
3 months ago
4
Is the lasted GTDB database version220 missing files?
#589
changhaozhou
closed
4 months ago
0
The GTDB-Tk reference data does not exist or is corrupted.
#588
vichy123
closed
3 months ago
4
GTDB-tk has given confliction results for two genomes using different command
#587
quliping
closed
4 months ago
2
Inquiry on the error "libgsl.so.25"
#586
songmj86
closed
5 months ago
1
Total genome counter in log is off (warning message)
#585
GabeAl
opened
5 months ago
1
Merge Staging for release of 2.4.0
#584
pchaumeil
closed
5 months ago
0
def TypedDict(typename, fields=_marker,/, *, total=True, closed=False, **kwargs): SyntaxError: invalid syntax
#583
zhaoxuetong
closed
4 months ago
3
feat(fix of #576):
#582
pchaumeil
closed
5 months ago
0
Rename summary fields
#581
pchaumeil
closed
5 months ago
0
fix(fixing of issue #573):
#580
pchaumeil
closed
5 months ago
0
Skani branch
#579
pchaumeil
closed
6 months ago
0
Getting the GTDB version used from GTDB-Tk
#578
wwood
closed
6 months ago
2
Merge master to Staging
#577
pchaumeil
closed
6 months ago
0
classify_wf errors out when all inputs are unclassified
#576
Zach-Sisson-1
closed
4 months ago
0
Using gtdb_to_ncbi_majority_vote.py script to convert gtbd taxonomy to SILVA taxonomy
#575
tarunaaggarwal
closed
3 months ago
2
Decorate command issue
#574
Nura7177
closed
6 months ago
1
Attempting to add duplicate row
#573
liu-congcong
closed
4 months ago
4
Small (mock) reference data
#572
bernt-matthias
closed
4 months ago
3
Specify in documentation that the `--genes` parameter requires proteins as input.
#571
LeeBergstrand
closed
4 months ago
0
de_novo_wf fails to parse gtdb classification file
#570
adityabandla
closed
7 months ago
1
pydantic.dev/2.6/v/missing
#569
WUD2018
closed
4 months ago
1
relative evolutionary divergence (RED) values and median RED values
#568
Julboteroc
closed
4 months ago
3
How to get a tree containing all my MAGs
#567
Sh1von
closed
4 months ago
1
Error running Prodigal on genome
#566
fhdbqr
opened
9 months ago
4
fix(setup.py): use ~= to constrain major version
#565
Artoria2e5
closed
6 months ago
1
RED value and classification results
#564
rusanovaA
closed
10 months ago
4
Cannot open classify.tree file in Dendroscope
#563
lewhiteside
closed
4 months ago
2
fix(Issue561): resolved issue with Unclassified assignments breaking …
#562
donovan-h-parks
closed
10 months ago
0
gtdb_to_ncbi_majority_vote and Unclassified Bacteria
#561
ttubb
closed
10 months ago
2
How to understand RELATIVE EVOLUTIONARY DIVERSION (RED)?
#560
wanxn518
closed
5 months ago
4
Error occured using gtdbtk de_novo_wf for bins
#559
jojyjohn28
closed
10 months ago
5
The annotation results of gtdbtk are inconsistent with the Phylogenetic position.
#558
wanxn518
closed
5 months ago
4
gtdbtk: error: unrecognized arguments: --mash_db
#557
Abelcanc3rhack3r
closed
10 months ago
1
Uncontrolled exit resulting from an unexpected error.
#556
smta11
closed
5 months ago
4
gtdbtk.exceptions.ProdigalException: An exception was caught while running Prodigal: Prodigal returned a non-zero exit code.
#555
agmpo
closed
5 months ago
6
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