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Hello,
thank you for the great package. I'm curently using monocle 2.32.0 installed from bioconductor. During my analysis, I have observed that the DDRTree dimensional reduction, pseudotime assignm…
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Check overlaps/redundancy with the `msPurity` Bioconductor package: https://bioconductor.org/packages/3.9/bioc/html/msPurity.html
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I'm working on a [BioConductor package](https://github.com/brendanf/inferrnal) to interface with [Infernal](http://eddylab.org/infernal), which produces RNA alignments with an extended dot-bracket not…
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## Description
The `rgeos` package was removed from the CRAN repository: https://cran.r-project.org/web/packages/rgeos/index.html. When I try to install `flowDensity`, I get this warning:
```
>…
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Hi,
Will you be updating Logolas for use with the newer bioconductor version? I really like this program!
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Hi
I was just wondering if you have considered submitting CIDR to Bioconductor?
I have been working on a package which I have submitted and would like to use a couple of the funcitons in CIDR in…
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This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
I'm trying to install this package, but the Bioco…
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Dear iSEE developers,
I am looking at the first example of the [Sharing information across iSEE panels](https://github.com/iSEE/iSEE/blob/master/vignettes/links.Rmd) vignette, learning how to selec…
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Hie,
I'm facing the issue to install the monocle package for version 2.
# Install BiocManager if not already done
> if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")
>…
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I get this error when running:
# count BAM reads in, e.g. 300 bp windows
counts