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Code by @peterjc
Submitted by @kianho
http://www2.warwick.ac.uk/fac/sci/moac/people/students/peter_cock/python/protein_contact_map/
(@kianho -I have a modified version of this as a complete snippet …
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Our starting point for this session is @kamzune's Perl script `calculate_nuc.pl`. The challenge: convert this to Python (with some BioPython as well I expect).
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Conda environments for rampart and for deepnano currently have incompatible requirements.
(no biopython for python3.9)
Can we do anything about it?
So far this is not very user friendly...
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Hello,
Which version of Biopython should be installed? I am running BindCraft locally and I end up with an attribute error: AttributeError: module 'Bio.PDB.Polypeptide' has no attribute 'three_to_o…
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The requirement Biopython requires Python 3.6 or later however Python 3.5 is configured in Travis CI build check hence it is wrongly failing all valid Pull Requests.
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`Bio.codonalign` was added to Biopython about 8 years ago. Currently this module is still considered to be experimental, and prints a `BiopythonExperimentalWarning` when imported:
```python
>>> fr…
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such as conda or singularity
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…
kblin updated
4 years ago
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I installed python3
biopython
pysam
gffutils
pandas
cmake
samtools
zlib in a newly created conda environment.
```
conda create -n asgal -y
conda activate asgal
conda install python=3…
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We should set up a way to sync libraries.