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Hi,
This original set term "histone mRNA 3'-end processing ; GO:0006398" and its histone mRNA specific parent term (histone mRNA metabolic process ; GO:0008334) were probably made based on the fact t…
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```
> What steps will reproduce the problem?
Running an MGF file created from RAW LTQ data of a no enzyme digest analysis.
> What is the expected output? What do you see instead?
Expecting Peptidesha…
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Hi,
I am trying to create a compound node and move some elements to that compound node by using eles.move( ) function. I observed that when width or height attribute is set for nodes, eles.move( ) …
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MSGF+ reports peptides with cleavages sites before Proline. OpenMS does not allow for KP or RP cleavage sites. Therefore PeptideIndexer crashes with allow_unmatched = false.
PAASRMQIEKAVEMLIQAER
> s…
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Kinetics of substrate analogue binding to an active site of an enzyme can be monitored to infer interaction with, eg, allosteric regulator. This is close to enzymatic assay but not exactly. It is also…
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```
General discussion about enzymes:
- The simple case rule is cleave at x, y or z unless the adjacent residue
is a, b or c
- An enzyme can cleave either side of a residue (normally known as cterm o…
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GO:0017183
peptidyl-diphthamide biosynthetic process from peptidyl-histidine
is defined
The posttranslational modification of peptidyl-histidine to 2'-(3-carboxamido-3-(trimethylammonio)propyl)-L-hist…
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Hi,
It seems we could merge these 2 terms:
RNA splicing factor activity, transesterification mechanism ; GO:0031202
spliceosomal catalysis ; GO:0000385
They're essentially the same thing. Basicall…
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Kinetics of substrate analogue binding to an active site of an enzyme can be monitored to infer interaction with, eg, allosteric regulator. This is close to enzymatic assay but not exactly. It is also…
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Hello,
I have doubts about the definition of "ubiquitin thiolesterase activity": Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, includi…