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Hi,
Thanks for developing such wonderful tool. I want to use singleR to identify cell types in my 10X data. The result shows there is a cluster of "Monocyte" in my data. However, there should not be …
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I have installed the tool and while running it,the following error was prompted:
Traceback (most recent call last):
File "./ptf.py", line 8, in
from core.excute import main
File "/opt/Pen…
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Is anything further required to include them ?
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Hi @LuckyMD, I'm trying out embedding_density() using the latest scanpy version.
First of all, this is a wonderful feature - thank you!
Second, I was wondering if it would be possible to extend…
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sir i am using parrot OS 3.7
after all installation complete showing some error like below:
*("Successfully installed xettercap-1.5.7xerob
Parsing documentation for xettercap-1.5.7xerob
Install…
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Hi,
When I ran doublet decon, after the data cleaning and preparation steps (It was very hard to mimic your custer/top50genes/counts etc data, because clear instructions weren't given), it ran with…
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Hi,
I have a question regarding the input to ENVI. I read in one of [your comments in another issue](https://github.com/dpeerlab/ENVI/issues/4#issuecomment-1997787689) that "Also, make sure the dat…
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Thanks for your great work! But I have a question about if a droplet will not change once it is detected as a doublet? And what does this code mean below? Why droplets whose 'label_refer != 0.05' is n…
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Hi @huangyh09,
Thank you for creating vireo & cellsnp-lite - it is my to go software for demultiplexing!!
We have multiomic sequencing (shallow)
1. for scRNA 3320 mean raw reads per cell
2…
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Hi,
I’m working with scRNA-seq data where three samples are pooled together and we have 20 pools. I used souporcell for demultiplexing without initial whole-genome sequencing SNP data (as it wasn’t…