EDePasquale DoubletDecon issues

EDePasquale / DoubletDecon

A tool for removing doublets from single-cell RNA-seq data

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issues

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Improved_Seurat_Preprocessed() in DoubletDecon gives error

#56 karthikavarmar opened 6 months ago
1
Warning messages about data length differs from size of matrix

#55 coralzhang opened 1 year ago
0
Some samples have an error running Main_Doublet_Decon

#54 WangRong423 opened 2 years ago
4
Error in Main_Doublet_Decon

#53 1cm121 opened 2 years ago
0
Failed to install 'shinyDirectoryInput' from GitHub:

#52 mbartl13 opened 3 years ago
0
Error in Improved_Seurat_Pre_Process

#51 mvhunter1 opened 3 years ago
0
Issues testing rho-prime values in shiny app

#50 MSommars opened 3 years ago
1
Tips for running in windows?

#49 RobertWhitener opened 3 years ago
0
Problem with removeCC

#48 abigailelliot26 opened 3 years ago
2
Opening DoubletDecon Shiny app

#47 abigailelliot26 opened 3 years ago
1
Error in data.frame(..., check.names = FALSE) at Combining similar clusters

#46 jamrute opened 3 years ago
1
no locations are finite

#45 rahulnutron closed 3 years ago
2
Unable to open DoubletDecon UI in R on Windows machine

#44 xhbkirby closed 3 years ago
1
Minor issue with latest update for Seurat 4

#43 Dazcam closed 3 years ago
1
Problem with `filter()` input `..1`

#42 rahulnutron opened 3 years ago
3
Any updates to support Seurat 4?

#41 Dazcam closed 3 years ago
4
Improved_Seurat_Pre_Processing()

#40 yoavhadas closed 3 years ago
2
Improved_Seurat_Pre_Process: Error in asMethod(object)

#39 jraymond105 closed 3 years ago
0
How to interpret DoubletDecon output?

#38 charlesgwellem opened 3 years ago
0
the results of Demuxlet dataset

#37 JuanruMaryGuo opened 4 years ago
2
Exporting Seurat object to the DoubletDecon app

#36 Hatfield123 opened 4 years ago
1
untar issue during installation

#35 xcliu-oc opened 4 years ago
2
scATAC-seq doublet detection

#34 RegnerM2015 opened 4 years ago
1
Trouble understanding the output

#33 yen-tran-91 opened 4 years ago
1
A packages dependecies should NOT go into the readme!

#32 stela2502 closed 4 years ago
2
Error in (function (side, at = NULL, labels = TRUE, tick = TRUE, line = NA, : no locations are finite

#31 DirtyHarry80 opened 4 years ago
1
Error in paste0(location, filename, "_groups") : cannot coerce type 'closure' to vector of type 'character'

#30 DirtyHarry80 opened 4 years ago
6
Improved_Seurat_Pre_Process could not find function

#29 rzhao0624 opened 4 years ago
1
"Unable to perform mcl function for blacklist clustering" while using GUI

#28 carlyrosewilling opened 4 years ago
1
Request: DoubletDecon Shiny - change to platform-neutral shinyFiles directory selector

#27 kmshort opened 4 years ago
1
DoubletDecon - Main_Doublet_Decon - no locations are finite error.

#26 kmshort opened 4 years ago
4
Too many doublets being called

#25 piyushjo15 opened 4 years ago
3
Error at "combining similar clusters"

#24 daccachejoe closed 4 years ago
3
Functions in NAMESPACE not exported

#23 nlawlor closed 4 years ago
2
Post-DoubletDecon Steps

#22 nrnatesh closed 4 years ago
1
Creating synthetic doublets error

#21 xnnba closed 4 years ago
5
Fix potential issue with cores in parallel

#20 pieterjanvc opened 4 years ago
0
Improved_Seurat_Pre_Process String Idents

#19 alperoglu closed 4 years ago
0
Improved_Seurat_Pre_Process: undefined columns selected

#18 Tushar-87 opened 4 years ago
2
all connections are in use error

#17 pengyu1608 opened 4 years ago
2
Eagerly waiting for the protocol or guided tutorial...

#16 Tushar-87 closed 4 years ago
2
Running DoubletDecon on integrated seurat objects

#15 saisomesh2594 closed 4 years ago
2
How to run DoubletDecon UI with Shiny ?

#14 ChaDuss closed 4 years ago
2
sctransform pipeline?

#13 kurchejs closed 4 years ago
3
dplyr loading issues

#12 chansigit closed 4 years ago
1
"Unable to perform mcl function for blacklist clustering, please try a different rhop." from black lists

#11 onurdanaci opened 4 years ago
11
Main Function Crashes: attempt to set 'colnames' on an object with less than two dimensions

#10 onurdanaci closed 4 years ago
1
problem with example data

#9 fangling0913 closed 4 years ago
1
Cannot download package

#8 Gorman222 opened 5 years ago
1
Seurat_Pre_Process few issues

#7 hanasusak opened 5 years ago
1