-
Hi,
I'm trying to phase rare variants, which goes well for the greatest part. I used the files and instructions you provided in the [documentation](https://odelaneau.github.io/shapeit5/docs/tutoria…
-
collecting references and annotations --
1. [VarCover: Allele Min-Set Cover Software](https://www.sciencedirect.com/science/article/abs/pii/S1525157819304143)
>To facilitate reference-material s…
-
This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
-
Hi Pete,
I have an interesting case for you. Perhaps an annoying one. I accidentally ran into some variants that suddenly make me doubt the quality of the hg38 mappings using UTA.
When providing…
-
I ran into this when doing some testing and I haven't been able to figure out what the issue is so I figured I'd post. These are cows. Below is the beginning of the log for `phase_common` which runs f…
-
Hi, I built mango on Amazon EMR (5.3.1) as follows:
```
git clone https://github.com/bigdatagenomics/mango.git
cd mango
sh ./scripts/move_to_spark_2.sh
sh ./scripts/move_to_scala_2.11.sh
mvn …
-
Hi,
I am quite puzzled about how to appropriately set the number of different types of mutations when simulating a human cancer genome.
Could you provide me with some guidance on this matter?
…
-
@david-dayan
This prompted me to discover an issue with markers that use the "-" symbol to code multi-snp probes or indels. At some point I thought these were codes for missing data, but looking at …
-
Now that we've reconfigured and refactored the phasing pipeline to improve SV performance on 10Mbp, we probably need to make additional changes to improve scalability for whole chromosome/genome runs.…
-
I have install the Divine tool (https://github.com/hwanglab/divine/blob/master/documents/tutorial/divine_tutorial.md) but when I run the following command, I have got the error as shown below.
$ divi…