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Hi,
I am currently analysing a human transcriptome (both RNA-seq + miRNA-seq) dataset from myometrium samples for which paired proteomic data will be acquired v. soon. I was looking for approaches …
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Dear author,
I am a newbie in the field of bioinfo, so I don't have much experience in data finding. May you give me the download link for the data you used?
I would be really appreciated that.
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Currently, pathways are modeled as gene sets in Wikidata. Obviously, the interactions between molecules is crucial information that lends itself to semantic graph representation. We could enhance the …
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Hi dear Ensembl team,
I'm having some issues because I would like to annotate my genetic variants based on the canonical isoforms from UniProt, but I can't find a way to do it. Sometimes the MANE …
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Hello,
I have been investigating some odd results for an OrthoFinder run using NCBI data and new annotations from about 15 species of ducks and other fowl, and I think that I have found a bug in th…
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I'm triggering `RuntimeError('There exist transcripts missing length information.')`
We are following the example: https://emase.readthedocs.org/en/latest/examples.html#estimating-allele-specific-exp…
travc updated
8 years ago
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Hi, @yollct
`subprocess.call("wget https://zenodo.org/record/7228475/files/tutorial_alt_sorted_bc_tpm.csv?download=1 -O alt_sorted_bc_tpm.csv", shell=True)
subprocess.call("wget https://zenodo.org/…
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I've installed ESPRESSO and I was running the test and I find out that it can not run with 112 threads but 100,99 and 48 threads do work for some reason. I am running with 100 threads at the moment (a…
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Hello,
I am currently following the `kallisto | bustools` tutorial on processing nuclear RNA-seq, which runs `bustools count` on spliced and unspliced transcripts. I know that you can specify `--g…
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3 transcripts were identified in a sample. Their TPM values add up to ~546,000 and not 1 million like I would expect.
# stringtie -p 16 -j 10 -c 10 -s 10 -o output.stringtie.gtf input.Aligned.sorte…