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Hi everyone, I think it is time to start talking about a roadmap for version 1 of strawberry. I've been using the library on a few side projects and most importantly on [PyCon Italia's new website](ht…
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The fake negative entrez gene IDs give us a lot of headache. Let me document how we generate them here and see if we can solve the issue.
The mirna id file reside in the id-mapping-mirbase.txt file…
jjgao updated
4 years ago
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## Current Behaviour
We have to explicitly define action types for inputs and outputs, even if we are returning types that already exist (i.e. want to return `characters` type associated to alread…
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### Description
It is not possible at the moment to dynamically re-route tasks depending on the DAG Parameters.
An example:
```
@task
def helloWorld():
print("Hello World!")
@dag(
…
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### 🚧 Request For Comments! 🚧
The following proposal is up for discussion and will change.
The proposed APIs are not complete.
Please add your input as comments.
- [Why?](#why)
- [Description](…
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`covr` does not have the ability to produce this mapping. if desired, we'd need to build this ourselves. possibly like
```r
test_file = "tests/testthat/test-geo_linestring.R"
x = covr::file_cove…
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I'm opening this up as an issue so that we can look back on results without having to hunt though emails. I will post some results from 1000G below. I think it is nice to be able to look at this using…
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Using the End-to-End mode in the STAR aligner, short reads with mismatch are tend to be aligned into a wrong place on the genome.
Take human genome (GRCh38) as an example, fragment `.....ttccaagtt…
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**Is your feature request related to a problem? Please describe.**
When we want to use the Kube Secret mutation feature, we need to map in Vault the webhook's ServiceAccount name to a Vault Role th…
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```shell
./graphtyper genotype ~/data1/References/human/bowen/Homo_sapiens_assembly38.fasta --sam=NA12878/alignment/NA12878.alt_bwamem_GRCh38DH.20150718.CEU.low_coverage.bam --region=chr21 --threads=…