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When trying to run the script it complains that I do not have access rights to gs://mimic_iv_to_omop/waveforms/source_data/csv
Either you make this public or you somehow create a mechanism to allow u…
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Per discussion with Nuria, Peter, Hannah, Lauren, Bryan yesterday, we decided I think to investigate deploying OMOP2Phenopackets in the N3C Enclave.
Code is currently working using Synthea (simula…
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I am trying to download the downloadable OMOP CDMv5.2 version; however, the file seems not available to the public. Please modify the permissions to allow for public access
https://drive.google.com…
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Howdy!
I was working on something similar at work and was wondering if maybe we can contribute to this repo.
I'm pretty new to dbt and Synthea, but willing to help where I can :)
One thing t…
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Our OMOP CDM 5.3 at Regenstrief is currently stored in a Postgres database
Can this Python script include a postgres adapter?
https://github.com/National-COVID-Cohort-Collaborative/Phenotype_Data…
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**Problem description**
We have an outdated R client that is not maintained. We see that new features that we develop for Python algorithms are not usable to algorithms written in R. As quite a few a…
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1.Change domain_id of vocab DRG to 'Cost'
2.Add APR-DRG to vocabs (http://forums.ohdsi.org/users/jenniferduryea may have the info)
According to
http://forums.ohdsi.org/t/most-appropriate-omop-t…
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A CMS Inpatient_Claims data record has a ADMTNG_ICD9_DGNS_CD field and also ICD9_DGNS_CD_1 – ICD9_DGNS_CD_10, ICD9_PRCDR_CD_1 – ICD9_PRCDR_CD_6.
A concept in the vocabulary exists for Primary Diag…
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When you search on HERMES for the string "Bendroflumethiazide" you get no result (trying with the public version on ohdsi.org I get _Your search for "Bendroflumethiazide" found no results. Press escap…
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### Expected behavior
Able to select multiple cohort at the same time and do an action like
- delete
- refresh, generate, generate with feature, run a cohort characterization
### Actual behavior…