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OHDSI
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dbt-synthea
[Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
Apache License 2.0
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Run DQD on the dbt-synthea OMOP CDM
#44
katy-sadowski
opened
1 week ago
0
Look into potential visit ID assignment bug
#43
katy-sadowski
opened
1 week ago
0
Add LOCATION model(s)
#42
katy-sadowski
opened
1 week ago
0
Add CARE_SITE model(s)
#41
katy-sadowski
opened
1 week ago
0
Move date typecasts into stg models
#40
katy-sadowski
opened
1 week ago
0
Add cross-database macros where needed to ensure SQL queries work on all OHDSI-supported database platforms
#39
katy-sadowski
opened
2 weeks ago
0
Add a "dev mode" variable to toggle on materialization of stg and int models
#38
katy-sadowski
opened
2 weeks ago
0
Complete OMOP table config
#37
katy-sadowski
opened
2 weeks ago
0
Ensure data types are specified correctly in all model configs
#36
katy-sadowski
opened
2 weeks ago
0
Add tests for vocabulary stg models
#35
katy-sadowski
opened
2 weeks ago
0
Fix SqlFluff<>duckdb issue
#34
katy-sadowski
opened
2 weeks ago
0
Add back requirements.txt
#33
katy-sadowski
closed
1 week ago
0
Add additional stg models
#32
burrowse
closed
4 weeks ago
1
Add more models, fix column naming, add style guide, add SQLFluff
#31
katy-sadowski
closed
4 weeks ago
0
Test change
#30
RogerJCarlson
closed
1 month ago
2
Overall dbt-synthea layout
#29
RogerJCarlson
opened
3 months ago
0
Add stg model for Allergies table
#28
katy-sadowski
closed
1 month ago
1
Create stg model for supplies
#27
katy-sadowski
closed
4 weeks ago
0
Create stg model for providers
#26
katy-sadowski
closed
4 weeks ago
0
Create stg model for procedures
#25
katy-sadowski
closed
4 weeks ago
0
Create stg model for payers
#24
katy-sadowski
closed
4 weeks ago
0
Create stg model for payer_transitions
#23
katy-sadowski
closed
4 weeks ago
0
Create stg model for patients
#22
katy-sadowski
closed
3 months ago
1
Create stg model for organizations
#21
katy-sadowski
closed
4 weeks ago
0
Create stg model for observations
#20
katy-sadowski
closed
4 weeks ago
0
Create stg model for medications
#19
katy-sadowski
closed
4 weeks ago
0
Create stg model for immunizations
#18
katy-sadowski
closed
4 weeks ago
0
Create stg model for imaging_studies
#17
katy-sadowski
closed
4 weeks ago
0
Create stg model for encounters
#16
katy-sadowski
closed
4 weeks ago
0
Create stg model for devices
#15
katy-sadowski
closed
4 weeks ago
0
Create stg model for conditions
#14
katy-sadowski
closed
4 weeks ago
0
Create stg model for claims
#13
katy-sadowski
closed
4 weeks ago
0
Create stg model for claims_transactions
#12
katy-sadowski
closed
4 weeks ago
0
Create stg model for careplans
#11
katy-sadowski
closed
4 weeks ago
0
Create stg model for allergies
#10
katy-sadowski
closed
1 month ago
0
Decide on and implement lightweight "dev" vocabulary approach
#9
katy-sadowski
closed
1 week ago
1
Add a style guide markdown document to the repo
#8
vvcb
closed
4 weeks ago
0
Implement and configure SQLFluff in the repo
#7
vvcb
closed
4 weeks ago
4
Restructuring & reformatting
#6
katy-sadowski
closed
3 months ago
2
add jinja code to traverse columns dynamically, and updated the schem…
#5
adambouras
closed
3 months ago
1
Synthea to OMOP transformation using dbt
#4
vvcb
closed
2 weeks ago
6
Made changes to dbt_project, and Person.sql, and added the macro file
#3
adambouras
closed
4 months ago
1
Fix README, add Synthea seeds, add mock model
#2
katy-sadowski
closed
4 months ago
0
Contribution
#1
rjimenezhsc
opened
5 months ago
2