-
Hi,
I am using 10x Genomics data for pySCENIC analysis, and a lot of the detected transcription factors have a low expression level and high dropout rate. Will this affect the likelihood of identif…
-
Hi,
Thanks for the fantastic tool. I was wondering if it would be possible to input Scenic regulons (AUCell) as view in the mofa model, and if you ever tried to do so. Also, would this also require…
-
For the downstream analysis of pyscenic, unfortunatelly, i do not found any tutorials using R script. What i want is to compare different conditions and different cell types, to find regulons which …
-
Hi @cflerin ,
It so very weird that regulon , for instance the SP1 TF, was be selected for a significant regulon using the pyscenic. Nonetheless, i can not found the SP1 expression on the mRNA c…
-
https://mp.weixin.qq.com/s/w0lUALxJMEoHwSximV4e0g
ixxmu updated
2 years ago
-
**Describe the bug**
A clear and concise description of what the bug is.
IndexError: index 0 is out of bounds for axis 0 with size 0
**Steps to reproduce the behavior**
1. Command run when the err…
-
Hi,
I wonder if it makes sense to create a Cytoscape TF-target network based on Dorothea interactions. Especially, what do you think of using MoR for edge attributes? I assume it is reliable to use…
-
Hi,
I am trying to run MINI-EX. I get following error:
```
$ nextflow -C miniex.config run miniex.nf -resume
N E X T F L O W ~ version 21.10.5
Launching `miniex.nf` [compassionate_wozniak] - re…
-
In the output of the AUCell matrix header, the gene name was followed by a plus sign, what does this sign mean? Thanks very much.
Example:
Hdac6(+),Hes1(+),Hes7(+),Hey1(+)
-
https://mp.weixin.qq.com/s/w0lUALxJMEoHwSximV4e0g
ixxmu updated
2 years ago