bioFAM MOFA2 issues - Githubissues

bioFAM / MOFA2

Multi-Omics Factor Analysis

https://biofam.github.io/MOFA2/

GNU Lesser General Public License v3.0

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issues

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run_enrichment does not work when selecting a single factor

#164 jjcaff opened 2 weeks ago
0
not using the GPU well

#163 dorothyzh opened 2 weeks ago
0
prepare_mofa function doesn't seem to train the model

#162 nis2034 opened 4 weeks ago
2
The `<scale>` argument of `guides()` cannot be `FALSE` deprecation

#161 artur-sannikov opened 1 month ago
0
Error: run_enrichment error feature.sets has to be a list or a binary matrix.**

#160 mluciarr opened 2 months ago
0
Error: Error in h5checktype(). H5Identifier not valid.

#159 mluciarr opened 2 months ago
0
plot_enrichment_detailed function is not creating labeled plots

#158 velenjak1 opened 3 months ago
3
Outdated links to tutorials on website

#157 artur-sannikov opened 3 months ago
0
AttributeError: Module 'scipy' has no attribute 'shape'

#156 nbutyrate opened 3 months ago
7
Error in create_mofa_from_Seurat(BJ, groups = NULL, assays = c("RNA", :

#155 nbutyrate opened 3 months ago
0
AttributeError: Module 'scipy' has no attribute 'shape'

#154 madp4rry opened 3 months ago
2
AttributeError: Module 'scipy' has no attribute 'shape'

#153 WenhuoH closed 3 months ago
2
`correlate_covariates`: redundant conversion to numeric and incorrect warning

#152 artur-sannikov opened 3 months ago
1
`get_factors` and `get_variance_explained`

#151 artur-sannikov opened 3 months ago
0
Incorrect description of `plot_top_weights`?

#150 artur-sannikov opened 3 months ago
0
Error in training options

#149 vamikakarn opened 3 months ago
0
Incorrect links to documentation on website

#148 artur-sannikov opened 4 months ago
0
Mefisto error - ValueError: operands could not be broadcast together with shapes (10,1) (23,1)

#147 saum-kmr opened 4 months ago
5
AttributeError: 'BayesNet' object has no attribute 'train_stats'

#146 Marwansha opened 4 months ago
2
Get noise terms with MOFA2 R package

#145 BangzhuoTongUU opened 5 months ago
0
Implement mofa2 wrapper for MAE

#144 RiboRings opened 5 months ago
15
geneID in place of Features

#143 AudreyDub opened 5 months ago
0
installation of package ‘basilisk’ had non-zero exit status

#142 AlbertSL98 opened 6 months ago
1
Bugs with the argument color_by and shape_by in plot_weights

#141 salix-d opened 6 months ago
0
Fix .set colorby

#140 salix-d closed 3 weeks ago
0
Fix to .set_colorby

#139 salix-d closed 6 months ago
0
MOFA latent factors as predictor variables

#138 zroger49 opened 7 months ago
0
MOFAcell documentation

#137 roramirezf closed 7 months ago
0
names(MOFAobject@expectations) keeps showing NULL

#136 squirrelB closed 7 months ago
2
Prepare for upcoming Seurat v5 release

#135 saketkc opened 9 months ago
0
create_mofa_from_df issue

#134 alfonsosaera opened 9 months ago
2
Extended support for MultiAssayExperiment

#133 RiboRings opened 9 months ago
7
Unsure whether to use groups

#132 GabriellaS-K opened 10 months ago
0
run_mofa stuck on iteration 49. optimising sigma node

#131 GabriellaS-K closed 10 months ago
5
Dockerfile using R 4.3 or higher

#130 casper937 opened 10 months ago
0
Why weights need to be interpreted as relative value to 1 instead of absolute scale

#129 gmhhope opened 12 months ago
0
Way to save model directly in R

#128 hsiaoyi0504 opened 1 year ago
1
Error with spikeslab_factors = TRUE

#127 lujunyan1118 opened 1 year ago
2
Handling view of categorical data of which levels > 2

#126 gmhhope closed 9 months ago
1
Strategies using MOFA for integrating proteomic and CyTOF data

#125 pdimitron opened 1 year ago
1
`MOFAobject@expectations` is empty list

#124 danli349 opened 1 year ago
1
Can I analyze bulk RNAseq and bulk ATACseq together using `MOFA2`?

#123 danli349 opened 1 year ago
0
Found conflicts with python and glibc? please help

#122 HeenaBioinfo opened 1 year ago
0
weird output after trained the mofa model

#121 ryf0810 closed 1 year ago
0
Rcmd configure.win impaired when R_HOME path contains space

#120 liuhuoz opened 1 year ago
0
AttributeError: Module 'scipy' has no attribute 'random'

#119 ahucke opened 1 year ago
5
Have samples that are missing some data modality

#118 statwangz closed 1 year ago
5
calculate_contribution_scores

#117 ChristianRohde opened 1 year ago
0
Corrected link to template script in R.

#116 muktapalshikar closed 1 year ago
1
model_opts$spikeslab_weights <- TRUE

#115 ChristianRohde opened 1 year ago
3