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bioFAM
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MOFA2
Multi-Omics Factor Analysis
https://biofam.github.io/MOFA2/
GNU Lesser General Public License v3.0
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Have samples that are missing some data modality
#118
statwangz
closed
1 year ago
5
calculate_contribution_scores
#117
ChristianRohde
opened
1 year ago
0
Corrected link to template script in R.
#116
muktapalshikar
closed
1 year ago
1
model_opts$spikeslab_weights <- TRUE
#115
ChristianRohde
opened
1 year ago
3
Issues running MOFA2 with Basilisk on Ubuntu <=18
#114
dpmerrell
opened
1 year ago
0
Number of inducing points in MEFISTO
#113
ttgump
opened
1 year ago
1
Problem on the python environment when run run_mofa
#112
xinhuiwang
opened
1 year ago
1
Bioconductor 3.16's MOFA2 refers to no-longer-existing function basilisk.utils::installMiniconda
#111
github-rena
opened
1 year ago
0
Projecting unseen (test) data to the trained latent space
#110
borauyar
opened
1 year ago
1
Update prepare_mofa.R
#109
frederikziebell
closed
1 year ago
2
Error in py_call_impl(callable, dots$args, dots$keywords): AttributeError: Module 'scipy' has no attribute 'random'
#108
royfrancis
opened
1 year ago
8
batch effcts and data integration
#107
wangjiawen2013
closed
1 year ago
1
How to deal with unbalanced number of replicates between views - MEFISTO
#106
Eirinits
opened
1 year ago
1
plot_factors: fix continuous color scale when plotting >2 factors
#105
ilia-kats
opened
2 years ago
0
Implement GPU device selection (#103)
#104
gtca
closed
1 year ago
0
How to specify GPU device in MOFA2
#103
yulijia
opened
2 years ago
5
Problem with adding Feature metadata in Single Cell Multiome RNA+ATAC Tutorial
#102
jblich870
opened
2 years ago
0
Proper normalization for Proteomics and RNA-seq data
#101
MonicaSteffi
opened
2 years ago
2
Can MOFA integrate different omics data from independent studies?
#100
ElyasMo
closed
1 year ago
2
Error in get_expectations(object, "Z", as.data.frame) :
#99
MonicaSteffi
closed
2 years ago
0
`Installation paths not writeable, unable to update packages`
#98
bschilder
opened
2 years ago
6
Inconsistent scaling of feature weights in get_weights()
#97
oliviaAB
opened
2 years ago
0
MEFISTO error with plot_interpolation_vs_covariate() when some factors have been removed
#96
oliviaAB
closed
2 years ago
3
Add GPU/CUDA support in Docker image
#95
frederikziebell
opened
2 years ago
0
Improve documentation for argument factors in plot_factors()
#94
frederikziebell
opened
2 years ago
0
total explained variance is larger than 100
#93
DongzeHE
closed
2 years ago
1
How do I calculate one explained-variance value for each factor?
#92
ravipatel4
opened
2 years ago
2
Truncation of very long features names can lose uniqueness
#91
frederikziebell
opened
2 years ago
2
Error in run_enrichment. feature.sets has to be a list or a binary matrix.
#90
jiangfuqing
opened
2 years ago
1
matrix.please function not found
#89
jiangfuqing
opened
2 years ago
3
create_mofa issue with different number of samples in different data types
#88
clersdom
opened
2 years ago
1
Using multiple metadata as groups?
#87
nicolaromano
closed
1 year ago
1
Issue with factor exploration: "NA/NaN/Inf in foreign function call (arg 10)"
#86
jasiozaucha
opened
2 years ago
0
A problem with MEFISTO
#85
amitfrish
closed
2 years ago
0
Error with long feature_names strings, duplicated feature_names
#84
jmirobla
closed
2 years ago
0
Problems with legend of plot_factors()
#83
oliviaAB
closed
2 years ago
2
Error in run_enrichment
#82
ProphetDarkland
closed
2 years ago
7
Error in 'get_data' due to "matrix_placeholder" object
#81
oliviaAB
closed
2 years ago
2
Question regarding correlate_factors_with_covariates
#80
FloraMika
closed
2 years ago
4
Mofapy2 v0.6.4 won't run in R
#79
hleegwater
closed
2 years ago
3
plot_data_overview and loading model from hdf5 always indicate wrong number of features per view and number of samples per group
#78
marangiop
closed
3 years ago
1
fix url formatting
#77
jan-glx
closed
3 years ago
0
problem with mofa2 training
#76
gittina
closed
3 years ago
9
Improve error message when feature names are duplicated
#75
gtca
closed
2 years ago
6
Problem with load_model in R environment
#74
vinayduggi
closed
3 years ago
6
Problems with NA values
#73
geraldocantelli
closed
3 years ago
2
Problems creating MOFA object
#72
geraldocantelli
closed
3 years ago
13
doi no space
#71
alanocallaghan
closed
3 years ago
3
Version bump confuses reticulate
#70
emdann
closed
3 years ago
1
Incorrect number of dimensions
#69
sngiam88
closed
3 years ago
5
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