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Hi Tashrif,
In running non-FA TBSS using `--xfrmDir` option, the **commandline given** `--outdir` gets replaced by the previous `--outdir` path stored in the `log/command.txt`. This still leads to …
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The pathlength should include the extrema of the most peripheral slices.
In addition, it should be more robust in the trimming due to the cleaning during the skeletonization.
@baracch
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Thank you very much for sharing the code. However, I met an error when using BinaryThinningImageFilter3D, which output an empty image.
My environment is:
win 10
python 3.5.6
My code is:
im…
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I use `Surface_mesh_skeletonization/simple_mcfskel_sm_example.cpp` as example。 But I found that I cannot output the code in bold font normally。Cannot output normally from the sixth line。 can someone h…
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Hi,
I am a little bit confused about the second argument mask: It seems that mask is another layer of binary operation. If so, does the three commands below are equivalent?
skel = Skeleton3D(bin…
rmd13 updated
3 years ago
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Hi all,
thanks for this cool library.
I am generating skeltons from a local precomputed segmentation layer. And it worked after changing the function name to `create_skeletonizing_tasks()`. (the…
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We should implement a GUI command to generate tree(s) from skeletonized images. Skeletonization itself of grayscale images may be outside the scope of SNT, so it may be more suitable to parse only a p…
tferr updated
4 years ago
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Hi,
I'm trying to set up igneous on macOS Catalina and having issues with both pre-build Docker and manual installation. Do you suggest any workaround for setting up igneous on Catalina?
``…
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Hi Will,
I am curious if you know a smart or already existing way to extract the semantic structure of a skeleton created with kimimaro.
For example, I skeletonized this dendrite and want to know …
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Hello,
I was wanting to convert the .obj files for 3D models to skeleton and convert those into graphs further. For skeletonization I found out that skeleton-3D works great. But I don't know can it a…