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Hi,
Thanks for the package. Spectacular results with single cell RNASeq in tumors. I'd like to publish the identification of CAFs as normal cells in my tumors using it and it works smoothly in single…
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I am encountering an error at Step 13 of the inferCNV code. I am running an analysis with normal references. **The code I ran is:**
infercnv_obj = infercnv::run(infercnv_obj,
…
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Hi, I have an RNA count matrix for a few samples generated by cell ranger, turned into a Seurat object.
I'm running inferCNV on each sample separately. For a very small bad QC test sample with about…
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Hej!
När man använder ”Filter and export” (gula knappen), för att ladda ner SNVs eller SVs,
blir det max 500 varianter exporterade, kan ni ta bort max antal varianter? Alltså möjlighet att ladda …
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Hi,
i was testing purple on our data and wanted to try a few thinsg while waiting for gridss results to be completed.
when running purple with just
```
java -jar /dawson_genomics/Other/soft…
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https://mp.weixin.qq.com/s/j_Jonrk9-b5OK8_NzMdA4g
ixxmu updated
2 years ago
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Pretty much title.
The following lines are affected:
https://github.com/Clinical-Genomics/BALSAMIC/blob/72b633a8badbd557b01ad68252dc49f93789a630/BALSAMIC/snakemake_rules/variant_calling/somatic_…
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Dear team,
I am getting the following error twice after running for 5h at step15
INFO [2021-09-07 07:41:08] define_signif_tumor_subclusters(p_val=0.1
INFO [2021-09-07 07:41:08] define_signif_tu…
Sa753 updated
2 years ago
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**Case or sample information**
Internal sample id or case id: moralgoat, civilsole, fleetjay
Amount read-pairs:
Sequence type: WGS TN, WGS T-only
**Error message**
Slurm Job_id=1888477 Name=BA…
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https://mp.weixin.qq.com/s/BgQ3y7bewtp2mNMbNRBuBQ
ixxmu updated
2 years ago