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Clinical-Genomics
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scout
VCF visualization interface
https://clinical-genomics.github.io/scout
BSD 3-Clause "New" or "Revised" License
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SV gene variantS search
#4692
dnil
opened
1 day ago
2
Fix #4688 - unfreeze werkzeug to finally get >v3.0
#4691
dnil
closed
2 days ago
3
Add MSI score for tumor-normal cases
#4690
khurrammaqbool
closed
3 days ago
1
[obophenotype/human-phenotype-ontology] Release v2024-06-25
#4689
dnil
opened
4 days ago
0
Unfreeze Werkzeug again
#4688
dnil
closed
2 days ago
0
Version 4.84 - fix load order, chanjo-report extension load warning, …
#4687
dnil
closed
5 days ago
5
How we calculate VAF in scout
#4686
northwestwitch
opened
1 week ago
1
Linter python versions
#4685
dnil
closed
5 days ago
3
Workaround fix #4682 - sort case file load order alphabetically
#4684
dnil
closed
5 days ago
3
Swap menu chevrons
#4683
dnil
closed
1 week ago
2
SV variants and large SNVs collide in variant_id
#4682
dnil
closed
5 days ago
0
Stylistic updates to the "calculate matching causatives" toggle
#4681
Jakob37
closed
1 week ago
0
Fix gene links
#4680
northwestwitch
closed
1 week ago
2
Link to HGNC portal broken on gene page
#4679
northwestwitch
closed
1 week ago
0
Pydantic gene
#4678
northwestwitch
closed
1 week ago
6
Load genes missing Ensembl ID using cytoband coordinates
#4677
northwestwitch
opened
2 weeks ago
3
Clearer chanjo-report error message only when needed
#4676
northwestwitch
closed
2 weeks ago
3
Import chanjo-report warning emitted before log level set
#4675
dnil
closed
2 weeks ago
0
Safer variant updates in variantS controllers
#4674
northwestwitch
closed
2 weeks ago
2
Flash an alert when loqus instance is not reachable
#4673
northwestwitch
closed
2 weeks ago
4
nf-core/raredisease MT variants loading
#4672
dnil
closed
2 weeks ago
4
Upgrade python to 3.11 in the Dockerfiles
#4671
northwestwitch
closed
2 weeks ago
3
When updating the OMIM panel with --force, update also the date
#4670
northwestwitch
opened
2 weeks ago
1
Warnings when loqusdb-api is not reachable
#4669
dnil
closed
2 weeks ago
0
Extremely slow loading of variant pages when loqusdb instance can't be reached
#4668
northwestwitch
closed
2 weeks ago
3
Minor release 4.83
#4667
northwestwitch
closed
2 weeks ago
17
CLI option to link a panel to multiple institutes
#4666
Jakob37
closed
2 weeks ago
6
CLI option to remove an institute
#4665
Jakob37
opened
2 weeks ago
4
Changelog reminder version
#4664
dnil
closed
2 weeks ago
7
Automation: check CHANGELOG changes for latest version/unreleased
#4663
dnil
opened
3 weeks ago
0
Fix automatically loading research variants when loading a case
#4662
northwestwitch
closed
3 weeks ago
5
"scout setup demo" is loading also research variants, but they are not shown as a category of available vars on case page
#4661
northwestwitch
closed
3 weeks ago
2
Optimise safe genes by avoiding duplicates when collecting genes from many panels
#4660
northwestwitch
closed
3 weeks ago
2
Small event projection
#4659
dnil
closed
3 weeks ago
7
Speedup case page by saving in database (institute document) the list of safe genes for the institute
#4658
northwestwitch
closed
2 weeks ago
3
A small projection on panels, and use sets instead of explicit loops
#4657
dnil
closed
3 weeks ago
5
time case controller
#4656
dnil
closed
3 weeks ago
2
Speeding up case page interactions
#4655
Jakob37
opened
3 weeks ago
5
Parse drop
#4654
dnil
opened
3 weeks ago
5
Update issue templates
#4652
dnil
closed
4 weeks ago
2
Chanjo as extension
#4651
northwestwitch
closed
3 weeks ago
3
Attempt at speeding up tests
#4650
northwestwitch
closed
1 month ago
6
Lost access to Scout
#4649
Lucpen
closed
1 month ago
2
Can't connect to chanjo database
#4648
northwestwitch
closed
1 month ago
2
Fix PanelApp panel not saving genes with empty `EnsembleGeneIds` list
#4647
northwestwitch
closed
3 weeks ago
4
Fix #4645 - benign modifiers
#4646
dnil
closed
1 month ago
3
ACMG benign modifiers apply to is_likely_pathogenic and is_pathogenic
#4645
ViktorHy
closed
1 month ago
0
Modify OMIM-AUTO panel to include genes in both builds
#4644
northwestwitch
closed
1 month ago
4
Fix #4642 - dont crash on missing phenotype terms
#4643
dnil
closed
1 month ago
3
Empty phenotype_terms - after editing genes perhaps?
#4642
dnil
closed
1 month ago
1
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