Clinical-Genomics scout issues

Clinical-Genomics / scout

VCF visualization interface

https://clinical-genomics.github.io/scout

BSD 3-Clause "New" or "Revised" License

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issues

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Add panel indexes and better version check when editing a panel

#5068 northwestwitch closed 14 hours ago
3
Include just one removed panels show/hide on panels page

#5067 northwestwitch opened 16 hours ago
1
gene panel duplicate key

#5066 dnil closed 14 hours ago
5
Fix stranger missing loci

#5065 dnil closed 20 hours ago
4
Failing to upload variants from TRGT 1.2.0

#5064 fellen31 closed 20 hours ago
4
Patch version 4.91.1 - fix SV table header, update IGV

#5063 dnil closed 3 days ago
2
Parse and save correctly low-penetrance pathogenic and likely pathogenic ClinVar info

#5062 northwestwitch closed 18 hours ago
7
Fix filters parse and display

#5061 dnil opened 3 days ago
6
Missing filter status?

#5060 dnil opened 3 days ago
1
Fix #5058 - structural variantS header

#5059 dnil closed 3 days ago
2
Headings/extra type col for SV varianS

#5058 dnil closed 3 days ago
0
Fix #5056 - IGV.js 3.1.0

#5057 dnil closed 3 days ago
2
IGV.js 3.1.0

#5056 dnil closed 3 days ago
0
Update docs to include PanelApp Green Panel changes

#5055 northwestwitch opened 4 days ago
0
DockerHub Scout scout images rating

#5054 dnil opened 5 days ago
1
PyPi PEP 625 deprecation

#5053 dnil opened 5 days ago
2
Fix missing repeat locus info on STRs export

#5052 northwestwitch closed 5 days ago
4
Expand instructions on how to export data from scout

#5051 northwestwitch opened 5 days ago
0
Fix missing track round3

#5050 northwestwitch closed 5 days ago
2
Missing track item, bug 3

#5049 northwestwitch closed 5 days ago
3
Add "low_penetrance" to REV_CLINSIG_MAP

#5048 northwestwitch closed 18 hours ago
7
MT DNA freq guesstimate on each variant

#5047 dnil opened 6 days ago
1
Singleton RNA on DNA trio fallback is a bit dangerous

#5046 dnil opened 6 days ago
1
Merge `Qual` and `Callers` cell on cancer SNVs page

#5045 northwestwitch closed 5 days ago
6
Some cancer SNVs have filter but not callers

#5044 northwestwitch closed 5 days ago
0
Remove QUAL column on cancer SNVs now that callers are shown on Callers column

#5043 northwestwitch closed 5 days ago
0
Repeat locus cell not exported when exporting STRs

#5042 northwestwitch closed 5 days ago
0
Franklin variant link

#5041 dnil closed 6 days ago
5
Better layout for Consequence cell in cancer SNVs page

#5040 northwestwitch closed 6 days ago
3
Cancer SNVs list looks ugly

#5039 northwestwitch closed 6 days ago
0
Fix STRs variants view

#5038 northwestwitch closed 6 days ago
2
STRs view bug

#5037 northwestwitch closed 6 days ago
0
PanelApp links on gene and panel pages

#5036 dnil opened 1 week ago
0
Fix STRs export - part 2

#5035 northwestwitch closed 1 week ago
2
STR variants export is still broken

#5034 northwestwitch closed 1 week ago
2
Fix typing error when using python 3.9

#5033 northwestwitch closed 1 week ago
3
Error executing CLI commands using python 3.9

#5032 northwestwitch closed 1 week ago
4
Sorting of variant table on other columns

#5031 molucorner opened 1 week ago
1
Add variant link to Franklin

#5030 molucorner closed 6 days ago
3
Are we interested in having a button for removing ClinVar deletions from Scout?

#5029 northwestwitch opened 1 week ago
1
Fix #5017 pt2 - swings and merry-go-rounds

#5028 dnil closed 1 week ago
3
Missing track item pt2

#5027 dnil closed 1 week ago
3
Fix errors while setting igv tracks for cases with individuals missing alignments

#5026 northwestwitch closed 1 week ago
1
Refactor PanelApp panels loading to use the correct PanelApp API

#5025 northwestwitch closed 6 days ago
10
Minor release 4.91

#5024 northwestwitch closed 5 days ago
13
Crash on warn?

#5023 dnil opened 1 week ago
2
Fix broken ClinVar submission status enquiry for all submissions after the latest

#5022 northwestwitch closed 1 week ago
3
ClinVar submission status enquiry works only for the first green submission

#5021 northwestwitch closed 1 week ago
1
Fix #5017 - ClinVar classifications of pathogenicity

#5020 dnil closed 1 week ago
5
Display institute _id + display name on dashboard filters

#5019 northwestwitch closed 1 week ago
2