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@kathsherratt, my understanding is that you started something like this?
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## The scene
Sometimes there's the need to create (for personal/internal use) and maybe even release (for public consumption) some code that is useful in and on itself, but it's just not ready to be …
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There is an issue with downloading gnomad data:
in ggd-run.sh
url_prefix=http://ftp.ensemblorg.ebi.ac.uk/pub/data_files/homo_sapiens/GRCh37/variation_genotype/gnomad/r2.1/genomes/
the correct…
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Presently, a function statically allocates its stack frame if it can be proven not to recurse. However, even code that does not directly recurse can still end up with multiple invocations active at th…
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What is the best approach to report variant levels?
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- [x] determine what columns from covid api data to use
- [x] map covid api data to new tables and columns in trileaf database
- [x] update database architecture
- [x] update `trileaf-db` package w…
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Hello, when I try to run the indexing step, I get this error.
```
Asking to truncate to max_length but no maximum length is provided and the model has no predefined maximum length. Default to n…
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how do we record standard WWTP parameters, like
* flow rate
* TSS
* BOD
two options
1 in the measurements table change **genregion** to be **measurementCategory** and add some options to t…
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Hi sir
I ran for several times. Unfortunately it always got stuck at 'Reconstructing amplicon', maybe amplicon 30, 130, etc. and no longer progress without error reporting. Once I waited as lon…
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Hi Daniel,
I'm trying to understand why GRIDSS wouldn't call this breakpoint. It's an HPV18 integration site on a chromosome 8, with lots of discordant and split reads supporting it. The tracks on …