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The dependencies are a bit heavy:
https://github.com/biopragmatics/bioversions/blob/5440e5aecad7d1c72e905c07a140389967c4ff9e/setup.cfg#L45-L60
I imagine this is because these dependencies are re…
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http://bioregistry.io/registry/geo
This (IMO, rightly) is the prefix for the Gene Expression Omnibus
This poses the question of where this should live in the registry:
http://obofoundry.org/o…
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Use this form to register a new ontology with the OBO Foundry. Please read the instructions provided here:
http://obofoundry.org/docs/NewOntologyRegistrationInstructions.html
## Ontology title
Fi…
mah11 updated
2 years ago
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Is this a good reason to fail the entire hgnc.py pipeline?
```
pyobo.identifier_utils.MissingPrefix: unhandled prefix ogms/OMRE found in curie ogms/OMRE:0000137
```
It could be, but then we w…
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See e.g., https://github.com/biopragmatics/biomappings/runs/3954820246?check_suite_focus=true
```
Building SSSOM export
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.7…
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http://bioregistry.io/registry/rrid
- has no n2t.net resolver in one part, middle, but does have an example where it resolves at the bottom.
also here
https://bioregistry.io/registry/antibodyreg…
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### Prefix
doi
### Provider Format URL
https://scholia.toolforge.org/doi/$1
### Contributor ORCID
0000-0001-7542-0286
egonw updated
2 years ago
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lol, @cthoyt and I keep independently developing similar things
https://pypi.org/project/prefixcommons/
which is the python lib for:
https://github.com/prefixcommons/biocontext
the idea is…
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As a follow-up to #1635, it's worth noting the Bioregistry is tracking conflicts between the OBO Foundry's license metadata (which is manually curated) and the OLS's license metadata (which I think is…
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An example Human Disease Ontology ID is `DOID:0110974` and the prefix is `doid`, hence I agree that Namespace in Pattern is true at http://bioregistry.io/registry/doid
> ![image](https://user-image…