-
Hi,
I tried to install maestro in r. However, I received following error:
Error: Failed to install 'MAESTRO' from GitHub:
(converted from warning) installation of package ‘C:/Users/~1/AppData/L…
-
Hi there,
I think the 1.3.1 release hasn't been uploaded to the `liulab-dfci` channel yet, so the current installation instructions throw an error.
-
Analyze the tables and columns that need indexing based on DB usage and queries
Already exists
gene_panel table STABLE_ID column
sample_list table STABLE_ID column
genetic_profile table STABLE_I…
-
https://www.nature.com/articles/s41591-019-0654-5
- [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this ch…
jjgao updated
3 years ago
-
Hello @liulab-dfci,
I hope all is going well, and that you are staying safe in these strange times. I just wanted to preface this by saying thank you for creating TRUST4. It is very useful, and I p…
-
Hello,
I tried to cluster my scRNA and scATAC datasets using a resolution other than 0.6 (this number was used in the MAESTRO vignettes), but I got an error saying that "ATAC_snn_res.0.6" or "RNA_…
-
# :wave: Welcome to GitHub Learning Lab's "Introduction to GitHub"
To get started, I’ll guide you through some important first steps in coding and collaborating on GitHub.
:point_down: _This arrow m…
-
### Description
As a developer, I want to clean-up all the errors identified by the validator tool.
### Acceptance criteria
- [x] all validator reports have been reviewed and data cleaned
-
To make this script more flexible for customized analysis, please add `DefaultAssay(ATAC)
-
Hi, I am using v1.3.1, and found a bug in Snakemake/scRNA/Snakefile:
```
shell:
"python " + SCRIPT_PATH + "/lisa_path.py --species {params.species} --input {params.lisadir} "
"Rs…