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**Snakemake version** 6.3
I know this is not the latest release, but I work on a closed system and getting an update installed can take a long time.
I saw no mention of this bug in the changelo…
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### The Global Nodes Meeting (GNM) Monday 28 June to Friday 2 July 2021
Includes slots for presentations and demonstrations from Nodes. I have in previous planning of the GNM indicated possible con…
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Was your bat sequence data already divided into forward and reverse reads, or did you have a pipeline step to sort it? I was also wondering what resources you read/found about using blastn for betabar…
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Including in e.g. in [this](https://docs.gbif-uat.org/publishing-dna-derived-data/1.0/en/#dna-metabarcoding-sequence-derived-data) section.
Suggested action: cross-check of all references in the do…
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**problem**: I have MiSeq PE metabarcoding fastq files from bacteria, but **no** mock community sequenced.
**I want** to validate my bioinformatics workflow.
**question**: as a partial solution, cou…
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Hello Felix,
After the installation I tried:
snakemake --use-conda -s metabarcoding.snakemake.py -j 2
I get the following error message
Building DAG of jobs...
Creating conda environment env…
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Dear benjjneb,
Thank you very much for this great pipeline!
We are currently developing the metabarcoding approach to characterize nematode communities in our soil samples. We would like to construc…
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Set at 24 hours, a timeout from Dryad occurred on for submission:
```erc:
who: Jensen, Mads Reinholdt; Egelyng Sigsgaard, Eva; Agersnap, Sune; Jessen Rasmussen, Jes; Baattrup-Pedersen, Annette;…
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Hello,
I am using dada2 for a metabarcoding project and I was curious if there was a way for me to extract the sequences identified during the tracking step of the dada2 pipeline. For instance, I w…
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Hey @BPerezLamarque
Thank you for an amazing paper and tutorial for running the "HOME_model".
I am getting an error where the OTU tree tips need to match the host tree, but they need to be unqiue…