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**System Information**
* OS: Windows 10 Education x86_64 (build: 19041.685)
* Blender version: 2.91
* Add-on version: latest version of the master branch (commit ae79211)
* Metasequoia version…
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I am attempting to run this pipeline for the first time on my institution's compute cluster, but am getting a weird Python error. I've installed the `encode-atac-seq-pipeline` successfully (as far as …
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Hello,
This issue is likely due to user error -- sorry I am relatively new to Docker. I am trying to build your docker image by running the following from your github site and then using Cromwell …
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Can you please adjust the pipeline to output TSS enrichment when the starting files are BAMs as opposed to FASTQ files? I've attached the config files and QC reports from two test runs: (1) starting f…
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* related to #14
* onClick (or tooltip) for ideogram should draw linkage plots
* write rest endpoint to return a list of variants (defining the x/y axis of the correlation matrix) and a list of…
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Hi again. I was hoping you might help me guess the source of some errors I have been getting. I am trying to make average plots of bigwig histone mark data (~25 files), plotted around my TFBS (gff fil…
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Hi daler, I love your metaseq, and pybedtools. Have you considered to upgrade metaseq, so we could do better data analysis work on python 3?
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These sample of Directx object files exported from Blender-exporter and …
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The ataqc module still will not finish running without an error. It looks like a similar issue to #66 , perhaps related to non-conventional chromosome names.
```
Picked up _JAVA_OPTIONS: -Xms256M …
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After implementing the change in #64, `call-ataqc` fails with the following error:
```
Traceback (most recent call last):
File "/users/nicolerg/anaconda2/envs/encode-atac-seq-pipeline/bin/encod…