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I tried to use the API to transcript the audio of an mp4 file. I followed the documentation, however I get an empty result.
I tried to transcript the same file using the demo on https://cloud.google.…
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The homozygous reference calls in the snpSniffer.vcf and not being added to the database. Likely this is a format difference between samtools and bcftools that the java app is not handling correctly.…
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Hi!
the problem is:
> my.vcf Reading VCF
> Error in if (stringi::stri_detect_fixed(str = check.source, pattern = "freeBayes") && :
> missing value where TRUE/FALSE needed
>
> Computat…
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I need to divided ./. and 0/0 in my project .But when I merged multiple gvcf with command blow
`bcftools-1.9 merge -g b37.fasta -l vcf_list -r 22 -Oz -o merged.g.vcf.gz
bcftools index -t merged.126.…
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I am running through this pipeline instead of using samtools and the diff in DP is huge, this must be due to bcftools filtering of everything! The use and explanation of --ff and --rf is not helpful, …
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I found out that the read depth in `I16` is not equal to the `DP` in my case. (`DP=9953;I16=0,9878,0,28,...`)
The sum of the four number supposed (I think!?) to equal to DP (raw read depth) numbe…
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Hi,
i wrote the error at facebook some days ago.
The installation of this tools works without any problems.
When i want to start any script it will show me this error: Execute failed: java.…
n3oka updated
5 years ago
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https://github.com/tgen/phoenix/blob/c23ef0ed0074e2e3735e2f07b8414c2217870703/modules/qc/bam_qc_all.jst#L225
Need to test the speed between using the option `regions-file` versus `targets-file`.
S…
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I have a number (18) of bam files with alignments from a total of 5 samples. I have added @RG lines to these with SM:sample_ids. When I run samtools mpileup with these samtools reports (correctly) 5 s…
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Does ANNOVAR offer the possibility to integrate hg38_multianno.csv back into original bcf file?
Thanks,
Serghei