-
Accomodation for “do not resuscitate” or “do not intubate” status for patients is required for N3C. Hopkins [preprint manuscript](https://www.medrxiv.org/content/10.1101/2020.05.24.20111864v1) cites …
-
A CMS Inpatient_Claims data record has a ADMTNG_ICD9_DGNS_CD field and also ICD9_DGNS_CD_1 – ICD9_DGNS_CD_10, ICD9_PRCDR_CD_1 – ICD9_PRCDR_CD_6.
A concept in the vocabulary exists for Primary Diag…
-
In the "about" section of this repository:
> PALLAS: Build process for OMOP Standardized Vocabularies. Currently not available as independent release. Therefore, do not clone or try to replicate. I…
-
Hello, we are working to develop a food allergy data commons using the OMOP data model. As a part of this we have been working to code our data dictionary to standard ATHENA codes. During this process…
-
Most of the OMOP standardized clinical data tables have a mandatory `type` concept_id field (e.g. `procedure_type_concept_id`), which describes where the data is derived from. As there is currently no…
-
TYPE | MEASUREMENT
-- | --
ITEM | Result of Culture and Microbiology Susceptibility
FORUM POST | http://forums.ohdsi.org/t/mapping-microbiology-susceptibility-into-omop-cdm4-observations/167
SOLUT…
-
I executed this sequence:
~~~
babel -ipdb az.pdb -omop az_opt.mop -xk "PM6"
mopac az_opt.mop #this is an alias for MOPAC2016.exe
babel -imopout az_opt.out -ipdb az_opt.pdb
~~~
The last comman…
-
Background: One of the changes made when adding the "mapstream" function was to switch from using the internal CDM definitions based on Django to dynamic loading of json configuration in which lists o…
-
We decided to introduce concept_id's for each field in OMOP cdm. e.g. we will be assigning a concept_id for person.person_id, visit_occurrence.visit_occurrence_id etc. To be released in future version…
-
We are using the most recent vocabulary (v5.0 15-DEC-17) to populate our OMOP instance, and we noticed drug concept ids that are in our dataset that are do not map to a standard concept id. I've atta…