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Hi,
Thanks for the fantastic tool. I was wondering if it would be possible to input Scenic regulons (AUCell) as view in the mofa model, and if you ever tried to do so. Also, would this also require…
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Hi,
I am trying to run MINI-EX. I get following error:
```
$ nextflow -C miniex.config run miniex.nf -resume
N E X T F L O W ~ version 21.10.5
Launching `miniex.nf` [compassionate_wozniak] - re…
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Hi @cflerin ,
It so very weird that regulon , for instance the SP1 TF, was be selected for a significant regulon using the pyscenic. Nonetheless, i can not found the SP1 expression on the mRNA c…
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**Describe the bug**
A clear and concise description of what the bug is.
IndexError: index 0 is out of bounds for axis 0 with size 0
**Steps to reproduce the behavior**
1. Command run when the err…
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Hi,
I wonder if it makes sense to create a Cytoscape TF-target network based on Dorothea interactions. Especially, what do you think of using MoR for edge attributes? I assume it is reliable to use…
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https://mp.weixin.qq.com/s/w0lUALxJMEoHwSximV4e0g
ixxmu updated
2 years ago
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In the output of the AUCell matrix header, the gene name was followed by a plus sign, what does this sign mean? Thanks very much.
Example:
Hdac6(+),Hes1(+),Hes7(+),Hey1(+)
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When the computational regulons of Python CTX is about 10% (pyscenic ctx), the machine can't move.
The following is my server configuration. Is your server configuration standard or computational…
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Hi, Developer
I want to build the pyscenic docker myself, and i confuse how to set the initial parameter when get start with pyscenic docker like you post in docker hub line command lying below:…
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I have generated an appropriate PKN using OmnipathR and imported an associated RNAseq (for example https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28392) but I encounter the following error
E…