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https://mp.weixin.qq.com/s/YZlwlcVgFkiwifbmnmgC6g
ixxmu updated
2 years ago
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## Bi-weekly meeting memo
0. Files that Shannon will share to Tao
- ATAC-seq datasets: fastq
- variant dataset: vcf
- packages: R Bioconductor, ChIPPeakAnno, ChipSeerker
1. make the footprint f…
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I'm getting this error message when using CreateChromatinAssay() using the code + data from the Signac [SNARE-seq vignette](https://satijalab.org/signac/articles/snareseq.html) which seems to have to …
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https://mp.weixin.qq.com/s/4-SUn7JGbnWlR4N5ekebtQ
ixxmu updated
3 years ago
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Dear Jaswinder,
The output files of SPOT-RNA includes the .ct, .bpseq and .prob files. I was wondering if there is an option that would allow us to have the output in the Vienna format? Besides, I …
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https://mp.weixin.qq.com/s/t71bpKKh4f84txt-i-85vg
ixxmu updated
3 years ago
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Add products to remaining proteins
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Awesome tool.
Is there a tutorial that I can obtain the 3'UTR sequences for Drosophila? Thanks!
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Dear team, sorry for bothering you, another question.
I used the pancreas object from "Integrate analysis of pancreatic islet scRNA-seq dataset". Everything is OK in that process.
However, running R…
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Hello, I am performing motif footprinting analysis from the signac [footprinting vignette](https://satijalab.org/signac/articles/footprint.html). After using `CreateMotifObject `and `SetAssayData`, t…