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I don't know if you recall, but a few months ago I mentioned that I am working on an open source protocol and I wrote the code for Multiprotocol to be the transmit module. I have finished up the rece…
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The nchar count in the nexus output file is totally wrong. For sim SE rad data the actual count for nchar is 82944, but the output.nex says nchar=118000.
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I'm running R3.3.1 on Ubuntu, an previously installed SeqArray on a mac (R3.3.1 again) with no issues
I'm getting a Seqfault with the seqVCF2GDS function. I've reinstalled R, plus all dependencies an…
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When feeding #each an array of objects, if the objects have _id in them at the instance level than each uses the full range of observable related dom transformations which means that interaction with …
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I'm trying to determine if I have an installation error or if a couple functions (seqAlleleCount and seqNumAllele) aren't exported.
> library(SeqArray")
> out_file gt_gds = seqOpen(out_file)
> seqSu…
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Hello,
I used GATK to analyze a gene panel for several subjects. I used snpEff for annotation and then used GATK's variantannotator to make the final vcf file. Now when I am trying to make a GDS f…
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Hello & thanks for the great work. This is similar to previous issue by randomStat. I used GATK to analyze whole genome sequencing data for two samples. I used snpEff for annotation and then used GATK…
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I using `u2622:persistent-session` in my project at that time i get one error.The error is "**Uncaught Error: Meteor does not currently support objects other than ObjectID as ids**".I didn't get any i…
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I'm trying to parse a VCF file with haploid genotypes, and got a segfault. Does SeqArray currently support haploid genotypes?
thanks,
Stephanie
```
> library(SeqArray)
Loading required package: gds…
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When statsmodels.tools.categorical creates the column names for the categories as follows:
(line 157)
```
if not tmp_arr.dtype.names:
tmp_arr = np.squeeze(tmp_arr).astype('str').tolist()
eli…