dereneaton ipyrad issues

dereneaton / ipyrad

Interactive assembly and analysis of RAD-seq data sets

http://ipyrad.readthedocs.io

GNU General Public License v3.0

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issues

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Step3: IndexError: string index out of range

#562 ckiel3 opened 22 hours ago
4
step 3 slow

#561 ospfsg opened 4 days ago
3
TypeError while using ipyrad.analysis.popgen

#560 spilornis-ng closed 1 week ago
2
analysis.treemix - toytree v3.0 compatibility

#559 isaacovercast opened 2 months ago
0
ipyrad v.0.9.94/95 frozen at the beggining

#558 ospfsg closed 2 months ago
4
No PE fastq pairs detected based on filenames, assuming SE data

#557 angelicagallegonar opened 2 months ago
2
ipyrad reference assembly: Key error 7372

#556 frsepulveda closed 2 months ago
3
iPyrad CLI tutorials (ABBA/BABA tests, Structure, treemix, etc)

#555 jesus-mavarez closed 2 months ago
1
Hyb-seq data, can be used with ipyrad?

#554 AngieOrtizHerrera closed 2 months ago
12
"1" ("2") instead of "_R1_" ("_R2_) in .fq data files

#553 jesus-mavarez closed 2 months ago
2
problems downloading Pedicularis example data

#552 jesus-mavarez opened 3 months ago
1
ipyrad error step 6: ValueError: cannot copy sequence with size 298 to array axis with dimension 299

#551 IvonedeBem opened 3 months ago
4
Popgen summary statistics fails when using imap

#550 zwuckl closed 3 months ago
3
Structure nreps 10 for k=[2, 3, …] on 16 Core CPU will only use 10 CPUs for each K

#549 kindofausername closed 4 months ago
1
Ipyrad excluding samples during demultiplexing stage

#548 ikb001 closed 4 months ago
5
Merging libraries of different read lengths

#547 spilornis-ng closed 4 months ago
1
combinatorial demultiplexing problem

#546 TomaszSuchan closed 4 months ago
4
UnboundLocalError: local variable 'barcode' referenced before assignment

#545 SerenaCaplins closed 4 months ago
3
Repeated pandas FutureWarning messages

#544 AlexaDiNicola closed 5 months ago
2
VCF output fails

#543 TomaszSuchan closed 5 months ago
2
*.ustr file and other files not generated when using a genome as a reference in the assembly method

#542 aroavaron opened 5 months ago
10
In Step 7: Message: ValueError: not enough values to unpack (expected 2, got 1)

#541 aroavaron opened 5 months ago
5
How to export toyplot.csv in Structure analysis ?

#540 khorikhori closed 4 months ago
5
ipyrad - PE original RAD with reference

#539 ivan06513 closed 5 months ago
1
ipyrad-baba error

#538 tsm-tsm closed 5 months ago
7
step3 error

#537 Kenjicoral closed 7 months ago
3
ipyrad-bucky error in python 3.12

#536 tsm-tsm closed 2 months ago
9
tetrad install in python 3.7

#535 tsm-tsm closed 7 months ago
0
tetrad install in python 3.8.12

#534 tsm-tsm closed 7 months ago
1
Erro engine

#533 nguzman14 closed 8 months ago
3
probleam in cutadapt with Ipyrad in Conda

#532 cavdberg closed 8 months ago
10
install old version of ipyrad

#531 gargkritika closed 8 months ago
0
An Error in Step3 # splitting loci so first file is smaller and last file is bigger

#530 jljy47 closed 8 months ago
5
Problem installing ipyrad on ubuntu

#529 kbkinsey closed 5 months ago
5
The timing bar is not updated after closing the Jupyter notebook web page by mistake

#528 jljy47 closed 8 months ago
2
How to express 'or' in the statement when establishing subsamples in step 7?

#527 jljy47 closed 9 months ago
2
ipyrad doesn't look for ipcluster in the right place

#526 DBrusson closed 9 months ago
3
looks for help: IpyradError(NO_ZIP_BINS.format(refseq_file)) at step 3.

#525 LaylaIsntHere closed 9 months ago
5
ipyrad rtfd 'latest' doesn't point to current docs

#524 isaacovercast opened 10 months ago
0
ipa.sratools - Broken

#523 isaacovercast opened 10 months ago
0
Can I reuse the files generated by Step 2,3,4 in a new data set to save a little time in a re-analysis

#522 jljy47 closed 10 months ago
6
Step 3: refminus for SE data

#521 isaacovercast opened 10 months ago
0
No module named \'cutadapt.cli\'\n’

#520 zerdoner closed 11 months ago
3
Optimal Min length of reads after adapter trim for paird-end ddRAD data.

#519 AliBasuony2022 closed 11 months ago
2
Restricting the length of loci in .loci output to specific length

#518 AliBasuony2022 closed 12 months ago
2
Clustering Threshold value and reference mapping

#517 Gutierrez-Larruscain closed 12 months ago
1
tmx.draw_tree() error

#516 siyeongjun closed 1 year ago
3
ModuleNotFoundError: No module named 'ipyrad'

#515 emagallong closed 1 year ago
6
Starting from step 2, demultiplexed/sorted fastq files

#514 AliBasuony2022 closed 1 year ago
1
How to add the ddRAD data to params.text

#513 AliBasuony2022 closed 1 year ago
2