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dereneaton
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ipyrad
Interactive assembly and analysis of RAD-seq data sets
http://ipyrad.readthedocs.io
GNU General Public License v3.0
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How to add the ddRAD data to params.text
#513
AliBasuony2022
closed
1 year ago
2
Issue : 'Step1' object has no attribute 'print_headers'
#512
stephamor
closed
1 year ago
3
analysis tools - CLUMPP on M1
#511
isaacovercast
opened
1 year ago
0
numpy has no attribute 'int'
#510
isaacovercast
closed
1 year ago
6
trim_loci does not work properly in ver 0.9.84 to trim 3' ends of loci
#509
gscabanne
closed
1 year ago
1
ipyrad (reference version, pairddrad) step 7 crash -- Message: KeyError: 68
#508
imaa9
opened
1 year ago
2
step 3 ipyrad error
#507
luchoamador
closed
1 year ago
17
ipyrad assembly step (1) stalls indefinitely
#506
billiemaguire
closed
1 year ago
4
Import ipyrad pca into sklearn method ?
#505
ptranvan
closed
1 year ago
1
Message: IndexError: string index out of range
#504
vherklotz
closed
1 year ago
4
ipyrad 0.9.88: treeslider / BPP: both give AttributeError: 'str' object has no attribute 'decode'.
#503
imaa9
closed
1 year ago
2
IndexError: Merging after step 2
#502
isaacovercast
closed
1 year ago
2
ddrad paired-end data
#501
aureliendejode
closed
1 year ago
2
Installation: Intel Mac conda resolving dependencies takes a very very long time
#500
isaacovercast
closed
10 months ago
2
Installing ipyrad on mac M2
#499
isaacovercast
opened
1 year ago
2
AttributeError: module 'numpy' has no attribute 'asscalar'
#498
LalitaSimpson
opened
1 year ago
10
Encountered an Error. Message: No loci passed filters.
#497
jiangqiuqiuu
closed
1 year ago
11
Solving retro-compatibility in windows extracter
#496
camayal
closed
1 year ago
0
ValueError: Length of values does not match length of index
#495
lnalinaf
closed
1 year ago
6
clustmap.py -q 30 option missing from command?
#494
zdzbinden
closed
1 year ago
4
Step 6 muscle_it() - ValueError: dictionary update sequence element #0 has length 1; 2 is required
#493
isaacovercast
closed
1 year ago
7
Popgen error AttributeError: 'str' object has no attribute 'decode'
#492
mydjc
opened
1 year ago
5
IPyradError
#491
mydjc
closed
1 year ago
5
KeyError: <ufunc 'invert'> at Assembly Step7
#490
mydjc
closed
1 year ago
2
Step3 error IndexError: string index out of range
#489
Uniltiranyu
closed
1 year ago
12
--ipcluster should not shut down the cluster
#488
isaacovercast
opened
1 year ago
0
Step 1 has been running and does not end, and there is no error message
#487
Zeroo11
closed
1 year ago
5
Step 5 ValueError: too many values to unpack (expected 2)
#486
malvaceae3
closed
1 year ago
7
Error with glibc installing tetrad
#485
alexkrohn
closed
2 years ago
1
problems in Step 3: Error merge pairs
#484
Yyeserin
closed
1 year ago
4
write_outfiles - Add PopData column to structure output
#483
isaacovercast
opened
2 years ago
0
ipa.sratools - Replace 'fastq-dump' with 'fasterq-dump'
#482
isaacovercast
opened
2 years ago
0
window_extracter: 'str' object has no attribute 'decode'
#481
alexkrohn
closed
1 year ago
2
changing VSEARCH default threads
#480
Phismil
closed
2 years ago
2
Recover all sites (invariant sites) in vcf
#479
biolevol
opened
2 years ago
6
PE 'nnnn' seperater
#478
isaacovercast
closed
2 years ago
2
Setp 3 crash "IndexError: string index out of range"
#477
benoitnabholz
closed
2 years ago
9
Chloroplast DNA problems
#476
c-mccarron
opened
2 years ago
4
pandas 1.4.0 breaks baba.py
#475
isaacovercast
closed
2 years ago
0
Step 1: "Error tokenizing data"
#474
c-mccarron
closed
2 years ago
7
Fatal error: FASTQ input is only allowed with the fastx_uniques command
#473
amesclir
closed
2 years ago
3
Installing ipyrad
#472
c-mccarron
closed
2 years ago
3
structure error propagation
#471
TankredO
closed
2 years ago
0
Error in FASTQ file at line 1: Line expected to start with \'@\', but found \'C\'\n')
#470
amesclir
closed
2 years ago
17
step3: vsearch 2.20 deprecated --derep_fulllength
#469
Uniltiranyu
closed
2 years ago
3
Feature Request: Restarting Partway Through a Step
#468
alexkrohn
opened
2 years ago
5
vcf outputs with depth information but no genotypes
#467
isaacovercast
closed
2 years ago
1
ipyrad conda install version conflicts on windows python3.7
#466
HowcanoeWang
closed
2 years ago
2
Error at step 4: Two Positional Arguments Given
#465
alexkrohn
closed
2 years ago
5
Structure fails without explanation
#464
alexkrohn
closed
2 years ago
23
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