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dereneaton
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ipyrad
Interactive assembly and analysis of RAD-seq data sets
http://ipyrad.readthedocs.io
GNU General Public License v3.0
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tetrad install in python 3.8.12
#534
tsm-tsm
closed
1 year ago
1
Erro engine
#533
nguzman14
closed
1 year ago
3
probleam in cutadapt with Ipyrad in Conda
#532
cavdberg
closed
1 year ago
10
install old version of ipyrad
#531
gargkritika
closed
1 year ago
0
An Error in Step3 # splitting loci so first file is smaller and last file is bigger
#530
jljy47
closed
1 year ago
5
Problem installing ipyrad on ubuntu
#529
kbkinsey
closed
10 months ago
5
The timing bar is not updated after closing the Jupyter notebook web page by mistake
#528
jljy47
closed
1 year ago
2
How to express 'or' in the statement when establishing subsamples in step 7?
#527
jljy47
closed
1 year ago
2
ipyrad doesn't look for ipcluster in the right place
#526
DBrusson
closed
1 year ago
3
looks for help: IpyradError(NO_ZIP_BINS.format(refseq_file)) at step 3.
#525
LaylaIsntHere
closed
1 year ago
5
ipyrad rtfd 'latest' doesn't point to current docs
#524
isaacovercast
opened
1 year ago
1
ipa.sratools - Broken
#523
isaacovercast
opened
1 year ago
1
Can I reuse the files generated by Step 2,3,4 in a new data set to save a little time in a re-analysis
#522
jljy47
closed
1 year ago
6
Step 3: refminus for SE data
#521
isaacovercast
opened
1 year ago
0
No module named \'cutadapt.cli\'\n’
#520
zerdoner
closed
1 year ago
3
Optimal Min length of reads after adapter trim for paird-end ddRAD data.
#519
AliBasuony2022
closed
1 year ago
2
Restricting the length of loci in .loci output to specific length
#518
AliBasuony2022
closed
1 year ago
2
Clustering Threshold value and reference mapping
#517
Gutierrez-Larruscain
closed
1 year ago
1
tmx.draw_tree() error
#516
siyeongjun
closed
1 year ago
3
ModuleNotFoundError: No module named 'ipyrad'
#515
emagallong
closed
1 year ago
6
Starting from step 2, demultiplexed/sorted fastq files
#514
AliBasuony2022
closed
1 year ago
1
How to add the ddRAD data to params.text
#513
AliBasuony2022
closed
1 year ago
2
Issue : 'Step1' object has no attribute 'print_headers'
#512
stephamor
closed
1 year ago
3
analysis tools - CLUMPP on M1
#511
isaacovercast
opened
1 year ago
0
numpy has no attribute 'int'
#510
isaacovercast
closed
1 year ago
6
trim_loci does not work properly in ver 0.9.84 to trim 3' ends of loci
#509
gscabanne
closed
1 year ago
1
ipyrad (reference version, pairddrad) step 7 crash -- Message: KeyError: 68
#508
imaa9
opened
1 year ago
2
step 3 ipyrad error
#507
luchoamador
closed
1 year ago
17
ipyrad assembly step (1) stalls indefinitely
#506
billiemaguire
closed
1 year ago
4
Import ipyrad pca into sklearn method ?
#505
ptranvan
closed
1 year ago
1
Message: IndexError: string index out of range
#504
vherklotz
closed
1 year ago
4
ipyrad 0.9.88: treeslider / BPP: both give AttributeError: 'str' object has no attribute 'decode'.
#503
imaa9
closed
1 year ago
2
IndexError: Merging after step 2
#502
isaacovercast
closed
1 year ago
2
ddrad paired-end data
#501
aureliendejode
closed
1 year ago
2
Installation: Intel Mac conda resolving dependencies takes a very very long time
#500
isaacovercast
closed
1 year ago
2
Installing ipyrad on Mac M1/M2 (osx-arm64)
#499
isaacovercast
opened
1 year ago
4
AttributeError: module 'numpy' has no attribute 'asscalar'
#498
LalitaSimpson
opened
1 year ago
10
Encountered an Error. Message: No loci passed filters.
#497
jiangqiuqiuu
closed
1 year ago
11
Solving retro-compatibility in windows extracter
#496
camayal
closed
1 year ago
0
ValueError: Length of values does not match length of index
#495
lnalinaf
closed
2 years ago
6
clustmap.py -q 30 option missing from command?
#494
zdzbinden
closed
2 years ago
4
Step 6 muscle_it() - ValueError: dictionary update sequence element #0 has length 1; 2 is required
#493
isaacovercast
closed
2 years ago
7
Popgen error AttributeError: 'str' object has no attribute 'decode'
#492
mydjc
opened
2 years ago
5
IPyradError
#491
mydjc
closed
2 years ago
5
KeyError: <ufunc 'invert'> at Assembly Step7
#490
mydjc
closed
2 years ago
2
Step3 error IndexError: string index out of range
#489
Uniltiranyu
closed
2 years ago
12
--ipcluster should not shut down the cluster
#488
isaacovercast
opened
2 years ago
0
Step 1 has been running and does not end, and there is no error message
#487
Zeroo11
closed
2 years ago
5
Step 5 ValueError: too many values to unpack (expected 2)
#486
malvaceae3
closed
2 years ago
7
Error with glibc installing tetrad
#485
alexkrohn
closed
2 years ago
1
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