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ipyrad
Interactive assembly and analysis of RAD-seq data sets
http://ipyrad.readthedocs.io
GNU General Public License v3.0
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ipyrad tries to find assembly file instead of reading parameters file
#563
d-caraballo
opened
5 days ago
1
Step3: IndexError: string index out of range
#562
ckiel3
opened
1 week ago
18
step 3 slow
#561
ospfsg
opened
1 week ago
3
TypeError while using ipyrad.analysis.popgen
#560
spilornis-ng
closed
2 weeks ago
2
analysis.treemix - toytree v3.0 compatibility
#559
isaacovercast
opened
2 months ago
0
ipyrad v.0.9.94/95 frozen at the beggining
#558
ospfsg
closed
2 months ago
4
No PE fastq pairs detected based on filenames, assuming SE data
#557
angelicagallegonar
opened
2 months ago
3
ipyrad reference assembly: Key error 7372
#556
frsepulveda
closed
2 months ago
3
iPyrad CLI tutorials (ABBA/BABA tests, Structure, treemix, etc)
#555
jesus-mavarez
closed
2 months ago
1
Hyb-seq data, can be used with ipyrad?
#554
AngieOrtizHerrera
closed
2 months ago
12
"1" ("2") instead of "_R1_" ("_R2_) in .fq data files
#553
jesus-mavarez
closed
2 months ago
2
problems downloading Pedicularis example data
#552
jesus-mavarez
opened
3 months ago
1
ipyrad error step 6: ValueError: cannot copy sequence with size 298 to array axis with dimension 299
#551
IvonedeBem
opened
3 months ago
4
Popgen summary statistics fails when using imap
#550
zwuckl
closed
3 months ago
3
Structure nreps 10 for k=[2, 3, …] on 16 Core CPU will only use 10 CPUs for each K
#549
kindofausername
closed
4 months ago
1
Ipyrad excluding samples during demultiplexing stage
#548
ikb001
closed
4 months ago
5
Merging libraries of different read lengths
#547
spilornis-ng
closed
4 months ago
1
combinatorial demultiplexing problem
#546
TomaszSuchan
closed
4 months ago
4
UnboundLocalError: local variable 'barcode' referenced before assignment
#545
SerenaCaplins
closed
5 months ago
3
Repeated pandas FutureWarning messages
#544
AlexaDiNicola
closed
5 months ago
2
VCF output fails
#543
TomaszSuchan
closed
5 months ago
2
*.ustr file and other files not generated when using a genome as a reference in the assembly method
#542
aroavaron
opened
5 months ago
10
In Step 7: Message: ValueError: not enough values to unpack (expected 2, got 1)
#541
aroavaron
opened
5 months ago
5
How to export toyplot.csv in Structure analysis ?
#540
khorikhori
closed
5 months ago
5
ipyrad - PE original RAD with reference
#539
ivan06513
closed
5 months ago
1
ipyrad-baba error
#538
tsm-tsm
closed
5 months ago
7
step3 error
#537
Kenjicoral
closed
7 months ago
3
ipyrad-bucky error in python 3.12
#536
tsm-tsm
closed
2 months ago
9
tetrad install in python 3.7
#535
tsm-tsm
closed
7 months ago
0
tetrad install in python 3.8.12
#534
tsm-tsm
closed
7 months ago
1
Erro engine
#533
nguzman14
closed
8 months ago
3
probleam in cutadapt with Ipyrad in Conda
#532
cavdberg
closed
8 months ago
10
install old version of ipyrad
#531
gargkritika
closed
8 months ago
0
An Error in Step3 # splitting loci so first file is smaller and last file is bigger
#530
jljy47
closed
8 months ago
5
Problem installing ipyrad on ubuntu
#529
kbkinsey
closed
5 months ago
5
The timing bar is not updated after closing the Jupyter notebook web page by mistake
#528
jljy47
closed
9 months ago
2
How to express 'or' in the statement when establishing subsamples in step 7?
#527
jljy47
closed
9 months ago
2
ipyrad doesn't look for ipcluster in the right place
#526
DBrusson
closed
9 months ago
3
looks for help: IpyradError(NO_ZIP_BINS.format(refseq_file)) at step 3.
#525
LaylaIsntHere
closed
9 months ago
5
ipyrad rtfd 'latest' doesn't point to current docs
#524
isaacovercast
opened
10 months ago
0
ipa.sratools - Broken
#523
isaacovercast
opened
10 months ago
0
Can I reuse the files generated by Step 2,3,4 in a new data set to save a little time in a re-analysis
#522
jljy47
closed
10 months ago
6
Step 3: refminus for SE data
#521
isaacovercast
opened
10 months ago
0
No module named \'cutadapt.cli\'\n’
#520
zerdoner
closed
11 months ago
3
Optimal Min length of reads after adapter trim for paird-end ddRAD data.
#519
AliBasuony2022
closed
12 months ago
2
Restricting the length of loci in .loci output to specific length
#518
AliBasuony2022
closed
1 year ago
2
Clustering Threshold value and reference mapping
#517
Gutierrez-Larruscain
closed
1 year ago
1
tmx.draw_tree() error
#516
siyeongjun
closed
1 year ago
3
ModuleNotFoundError: No module named 'ipyrad'
#515
emagallong
closed
1 year ago
6
Starting from step 2, demultiplexed/sorted fastq files
#514
AliBasuony2022
closed
1 year ago
1
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