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Hi,
I just noticed a problem with an uncaught exception in the cpac_pipeline.py.
If I modify the pipeline and set a skull_stripping method that is not handled by cpac it will continue the pipelin…
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Dear Dorian,
I newly successfully installed all the required components (R, ANTsR, ITKR..) and run LINDA v0.5.0 for a T1 image, but in the final stage it showed me the following error. Please, if p…
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I'm trying to run two different types of skull stripping in parallel. On the C-PAC documentation page, it says you can select this option in the gui. I would like to run it in a container using a pipe…
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I have some questions about your paper.
In your paper, you have provided the performance of `Affine only` and `ANTs`, could you share your scripts about how to get such results?
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`is.na(mask) - argument is not interpretable as logical`
This error is coming up on OSX installations of ANTsR/LINDA/LESYMAP. The error shows when an antsImage is checked if is NA (the default valu…
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Dear ANTs experts,
I am looking for suggestions to implement a skull stripping with dura stripping in each individual subject space. I am using PWD image (from MP2RAGE images with 2nd inversion tim…
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Hello - I am hoping for a little feedback or guidance re: an error I am encountering. To give you some context, I am a new user of tedana / me epi data (
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There was extra dura mater included with the brain in the parietal area, as well as registration issues as already noted in #694, sharing this subject as per @chrisfilo's request from [this conversati…
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### Summary
The containers are big and freesurfer is the largest contributor to that. What freesurfer commands do we run and how much from freesurfer do we need?
### Actual behavior
Containers ta…
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I noticed that we currently can't make custom adjustments to how skull-stripping is performed. This might be ok for some young adult datasets, but it really is a sticking point for working with child …