-
A common task we want to support is to answer position based queries, where a user wants to find out something about a given range of genomic positions, and therefore needs to convert that into a rang…
-
Hi, I am trying to harmonise data in multivariable MR and get the error below
Error in data_frame(A1 = A1, A2 = A2, B1 = B1, B2 = B2, keep = keep) :
could not find function "data_frame"
My…
-
These should go to `static`
```
ytanigaw@biobankengine:~/GlobalBioBankEngineRepo/gbe_browser/templates$ ls -hl donut/
total 44K
-rw-r--r-- 1 root root 674 Dec 27 17:16 A_freq.csv
-rw-r--r-- 1 …
-
A recent [forum post](https://forums.ohdsi.org/t/osm-vocabulary/16303/7) highlighted the issue that some vocabularies are set to "required" and as such will be always part of a download bundle / canno…
-
We've got two nice use cases of population and statistical genetics; a third use case that could attract users and contributors could be polygenic risk score computations.
I'm only glancingly famil…
-
Dear author,
Hope this issue alert finds you well.
I am running the function read_ukb_tabdata(fukbtab,dfhtml,fields_to_keep = baseline_fields) to extract the variables following the code:
bas…
-
The current code is looking for snakemake.exceptions.CheckSumMismatchException when deciding whether or not to retry a download:
https://github.com/snakemake/snakemake/blob/223bcc52d058e9704e69dac65…
-
Hi,
I tried running the code both on MacOS and Ubuntu, using the official MIRTK docker image as base image. In both cases I get a seg fault error during execution of the average_3d_ffd program. Seem…
vt232 updated
1 month ago
-
I'm compiling the following WDL
```
task load_shared_covars {
input {
String script_dir
File script = "~{script_dir}/traits/load_shared_covars.py"
File python_array_utils = "~{sc…
-
Hi
When running MTAG between two traits, I complete munging the first GWAS, but after that I get the A10 error below. It does not depend on the order of traits entered. What could I do here?
Thank…