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Hi,
I have to install pysam from the repository on my user directory because I have no access to the root. I used the command
python2.7 setup.py install --user --prefix=
but I got the following…
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Hi,
fastq looks good - but I'm wondering if there's a way to iterate multiple fastqs together when each of them may or may not be compressed? My current attempt basically involves munging the sourc…
wwood updated
2 years ago
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command
using docker `docker run --rm -it -v /mnt/e/E:/EEE hkubal/clair3:latest bash`
`/opt/bin/run_clair3.sh --bam_fn=/data/41195.minimap2.bam --ref_fn=/data/Homo_sapiens_assembly38.fasta.…
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Would make it very clear what type of file is being dealth with. Additionally, can avoid issues with things like vim being able to read bgziped files saved with .gz extensions and resaving them as re…
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Hi, I need help with an error running rpvg command.
I'm getting "paths_index.cpp:73: uint32_t PathsIndex::nodeLength(uint32_t) const: Assertion `hasNodeId(node_id)' failed" error, but I have no idea …
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When I tried to write a wrapper of htslib, I found some APIs are not exported as functions and cannot be found in the shared library file. For example, the [`sam_itr_queryi`](https://github.com/samtoo…
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This is a request for improved documentation.
Doing a hunt through the documentation I find local alleles mentioned in one section only:
```
$ egrep -n -i "local.*allele" ../bcftools/doc/*.txt
…
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Many of the Python files in Biopython still have self-tests at the end which are executed if the file is run directly via the idiom:
``` python
if __name__ == "__main__":
print("Running a qui…
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Hello, I am testing to replace jbrowse with mouse data, but the tbi of the mouse gff3 file is always wrong here. I don't know what is wrong. I would like to ask you about the index. Do you have any mo…
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Hi, Cargo is installed and added to path however, on building the `k-mer_distinguishing` tool with `cargo build --release` the package `rust-htslib v0.22.0` fails to build resulting in a error out `e…