GMOD jbrowse issues - Githubissues

GMOD / jbrowse

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

http://jbrowse.org

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issues

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Hi-C track: normalization and resolution

#1653 ianakim closed 1 month ago
0
node-modules folder is not created after running ./setup.sh

#1652 kostasgalexiou opened 1 month ago
0
[Question] Is there a way to reduce number of files generated during indexing?

#1651 shreyas-a-s opened 3 months ago
1
[Question] Is there any hideURIs option like JBrowse 2?

#1650 shreyas-a-s closed 3 months ago
2
Using a callback to set the height of sub-features is causing some of those features to be only partially-rendered

#1648 john-portwood opened 6 months ago
6
Feature Request display CIGAR mismatch codes when zoomed out more

#1643 childers opened 1 year ago
1
url controllable Highlighting in JB2

#1642 thomasvangurp closed 8 months ago
2
Pangenome presence absence viz ?

#1641 colindaven opened 1 year ago
2
Adding .bam and .bai from a server to the track.

#1639 adaware-loxo closed 1 year ago
3
Fix adding track in BioNanoGenomics plugins

#1637 cmdcolin opened 1 year ago
0
Cannot install jbrowse-1.16.11-release developer version on macos ventura

#1632 thuynnguyen opened 1 year ago
1
Hello, I am testing to replace jbrowse with mouse data, but the tbi of the mouse gff3 file is always wrong here. I don't know what is wrong. I would like to ask you about the index. Do you have any mouse data to provide? ? thanks

#1630 ouyang-lang opened 2 years ago
11
Tabix error

#1629 francicco closed 2 years ago
5
color of glyph

#1627 srobb1 closed 2 years ago
6
Updating Node Deps

#1626 childers opened 2 years ago
1
XS.c: loadable library and perl binaries are mismatched (got handshake key 0xde00080, needed 0xcd00080)

#1624 linnabrown closed 2 years ago
6
Problem with combination track, not working

#1619 armaos opened 2 years ago
10
Question: JB1 reference sequence alias?

#1618 srobb1 closed 3 years ago
9
HTML linkouts in 1.16.11-release not rendering in the About this track panel

#1617 childers closed 3 years ago
2
Links for older releases on the website are 404s

#1616 kevinlul closed 3 years ago
5
ItemRgb not working for me

#1615 srobb1 closed 3 years ago
6
SNPCoverage plots display fine with old laptop but not with new laptop

#1614 Joseph-Vineland closed 3 years ago
7
Possible feature request

#1612 ValWood opened 3 years ago
4
Some question about y-axis scales on track

#1611 ydy1127 closed 3 years ago
10
RequestError: Unable to load http://ip/jbrowse/JBrowse-1.16.11/data/CSV21/trackList.json?v=0.08820448948622106 status: 403.

#1610 xiaoaozqd closed 3 years ago
8
onClick problem with URL

#1609 mictadlo closed 3 years ago
7
Search by gene name

#1608 fuzing closed 3 years ago
1
Remove node-sass to help avoid some install issues

#1607 cmdcolin closed 3 years ago
3
tab focus for accessibility enhancement?

#1606 mpoelchau opened 3 years ago
3
Update jbrowse 1 website header to refer to jbrowse 2

#1605 cmdcolin closed 3 years ago
0
What these values consist of "3a6/c61/ab" in the last end point when we hit hit track information......seq/3a6/c61/ab/110-38.txt ?

#1604 sarimurrab closed 3 years ago
2
JBrowser configuration

#1603 werhmk closed 3 years ago
3
Bump hosted-git-info from 2.7.1 to 2.8.9 in /website

#1602 dependabot[bot] closed 3 years ago
2
Bump hosted-git-info from 2.8.8 to 2.8.9

#1601 dependabot[bot] closed 3 years ago
1
Bump lodash from 4.17.14 to 4.17.21 in /website

#1600 dependabot[bot] closed 3 years ago
1
Bump handlebars from 4.7.3 to 4.7.7

#1599 dependabot[bot] closed 3 years ago
1
Bump lodash from 4.17.15 to 4.17.21

#1598 dependabot[bot] closed 3 years ago
1
Bump url-parse from 1.4.3 to 1.5.1 in /website

#1597 dependabot[bot] closed 3 years ago
1
Feature start offset of one between Front-end and JS object

#1596 Bjoernsen closed 3 years ago
2
Available tracks window size

#1595 demis001 closed 3 years ago
5
Feature request: Absolute paths in configs

#1594 Gogis0 closed 3 years ago
4
reference sequence

#1593 scottcain closed 3 years ago
4
Bigwig XYplot

#1592 demis001 closed 3 years ago
11
JS class name of the glyph available options

#1591 demis001 closed 3 years ago
6
Update README.md to refer to jbrowse 2

#1590 cmdcolin closed 3 years ago
0
Failed to load resource: JBrowse/View/Track/Alignment2.

#1589 JojoZhangxinye closed 3 years ago
3
is there a way to organize a large number of datasets?

#1587 jvera888 opened 3 years ago
2
Bump y18n from 3.2.1 to 3.2.2

#1586 dependabot[bot] closed 3 years ago
1
remove forward and back slashes from chunk filenames when formatting …

#1585 rbuels closed 3 years ago
11
Vhost SSL setting gave 403 error, http works

#1584 demis001 closed 3 years ago
2