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We currently have two main disease intentifiers in the system, UMLS and MESH. The disease calls work with UMLS, the patent calls with Mesh, but there is no link between both. eg. obesity is
http://lin…
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I see you are getting markedly slow results with Caffe-Greentea. Which backends are you using, and do you know if they are the best available ?
In ( @naibaf7 ) Fabian Tschopp's tech report http://ar…
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when I try to use in chrX, it seems like only require int value.
should I use number 23?
AquilaSV_step1 --bam_file $input --vcf_file $
freebayes --chr_num "X" --out_dir aquila_sv
usage: us…
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FileNotFoundError: [Errno 2] No such file or directory: '/content/drive/My Drive/squadData/patients/train-v2.0.json'
Can you please upload/share the data ?
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And idea for a blog post series would be the following:
Use the Kaggle Arxiv Dataset: https://www.kaggle.com/Cornell-University/arxiv
Import only one category of articles.
Extract scientific conc…
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Currently [JNLPBA](https://github.com/bigscience-workshop/biomedical/blob/master/bigbio/biodatasets/jnlpba/jnlpba.py) is setup such that every token and tag is a single entity. This is not the correct…
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Hi,
Thank you for putting this pipeline together, we're hoping to perform some great research with it. I noticed today some trouble with installing the prerequisite tools for mitoHPC and narrowed d…
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Heya,
I couldn't find any installation instructions & how to verify successful installation. Could you provide some level of instructions?
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1. get all open access fulltexts
2. extract all HTTP links
3. release as a big list of http links and the papers they came from
herbert von sompel did a similar thing in http://journals.plos.org/…
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I want this integrated in our site...i want to see phenotypes on chromosomes.
http://visualization.ritchielab.psu.edu/phenograms/document
It seems like the Ritchie lab have done a lot if hard work, …